Michael R. Crusoe pushed to branch upstream at Debian Med / macsyfinder
Commits: bc360d51 by Michael R. Crusoe at 2026-01-31T13:34:17+01:00 New upstream version 2.1.6 - - - - - 68 changed files: - .github/workflows/testing.yml - CONTRIBUTORS.md - codemeta.json - doc/source/modeler_guide/modeling.rst - doc/source/user_guide/input.rst - doc/source/user_guide/new_v2.rst - nextflow.config - pyproject.toml - src/macsyfinder/__init__.py - src/macsyfinder/scripts/macsy_gembase_split.py - src/macsyfinder/scripts/macsy_merge_results.py - src/macsyfinder/scripts/macsyconfig.py - src/macsyfinder/scripts/macsyprofile.py - src/macsyfinder/scripts/msf.py - + tests/data/base/test_16.faa - + tests/data/functional_test_ordered_circular_small/all_best_solutions.tsv - + tests/data/functional_test_ordered_circular_small/all_systems.tsv - + tests/data/functional_test_ordered_circular_small/all_systems.txt - + tests/data/functional_test_ordered_circular_small/best_solution.tsv - + tests/data/functional_test_ordered_circular_small/best_solution_loners.tsv - + tests/data/functional_test_ordered_circular_small/best_solution_multisystems.tsv - + tests/data/functional_test_ordered_circular_small/best_solution_summary.tsv - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBB.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBB.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBB.search_hmm.out - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBQ.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBQ.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_MOBQ.search_hmm.out - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_t4cp1.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_t4cp1.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_t4cp1.search_hmm.out - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_virb4.res_hmm_extract - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_virb4.search_hmm.err - + tests/data/functional_test_ordered_circular_small/hmmer_results/T4SS_virb4.search_hmm.out - + tests/data/functional_test_ordered_circular_small/macsyfinder.conf - + tests/data/functional_test_ordered_circular_small/rejected_candidates.tsv - + tests/data/functional_test_ordered_circular_small/rejected_candidates.txt - + tests/data/functional_test_ordered_circular_small_2/all_best_solutions.tsv - + tests/data/functional_test_ordered_circular_small_2/all_systems.tsv - + tests/data/functional_test_ordered_circular_small_2/all_systems.txt - + tests/data/functional_test_ordered_circular_small_2/best_solution.tsv - + tests/data/functional_test_ordered_circular_small_2/best_solution_loners.tsv - + tests/data/functional_test_ordered_circular_small_2/best_solution_multisystems.tsv - + tests/data/functional_test_ordered_circular_small_2/best_solution_summary.tsv - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBB.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBB.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBB.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBQ.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBQ.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_MOBQ.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_t4cp1.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_t4cp1.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_t4cp1.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_virb4.res_hmm_extract - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_virb4.search_hmm.err - + tests/data/functional_test_ordered_circular_small_2/hmmer_results/T4SS_virb4.search_hmm.out - + tests/data/functional_test_ordered_circular_small_2/macsyfinder.conf - + tests/data/functional_test_ordered_circular_small_2/rejected_candidates.tsv - + tests/data/functional_test_ordered_circular_small_2/rejected_candidates.txt - + tests/data/models/functional/definitions/MOB_light.xml - + tests/data/models/functional/definitions/MOB_light_no_loner.xml - + tests/data/models/functional/profiles/T4SS_MOBB.hmm - + tests/data/models/functional/profiles/T4SS_MOBQ.hmm - + tests/data/models/functional/profiles/T4SS_t4cp1.hmm - + tests/data/models/functional/profiles/T4SS_virb4.hmm - tests/test_functional_test.py - tests/test_macsyconfig.py - tests/test_scripts.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/commit/bc360d51b2407cf323b3b18cfe679dd52b97aaed -- View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/commit/bc360d51b2407cf323b3b18cfe679dd52b97aaed You're receiving this email because of your account on salsa.debian.org.
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