Author: osallou Date: 2012-08-06 07:33:04 +0000 (Mon, 06 Aug 2012) New Revision: 12003
Added: trunk/packages/circos/tags/0.61-2/ trunk/packages/circos/tags/0.61-2/debian/ trunk/packages/circos/tags/0.61-2/debian/changelog trunk/packages/circos/tags/0.61-2/debian/control trunk/packages/circos/tags/0.61-2/debian/copyright trunk/packages/circos/tags/0.61-2/debian/fonts-circos-symbols.install Removed: trunk/packages/circos/tags/0.61-2/debian/ trunk/packages/circos/tags/0.61-2/debian/changelog trunk/packages/circos/tags/0.61-2/debian/control trunk/packages/circos/tags/0.61-2/debian/copyright trunk/packages/circos/tags/0.61-2/debian/otf-symbols-circos.install Log: [svn-buildpackage] Tagging circos 0.61-2 Deleted: trunk/packages/circos/tags/0.61-2/debian/changelog =================================================================== --- trunk/packages/circos/trunk/debian/changelog 2012-08-05 21:45:29 UTC (rev 11989) +++ trunk/packages/circos/tags/0.61-2/debian/changelog 2012-08-06 07:33:04 UTC (rev 12003) @@ -1,24 +0,0 @@ -circos (0.61-1) unstable; urgency=low - - [ Olivier Sallou ] - * New upstream release - - [ Charles Plessy ] - * renamed debian/upstream-metadata.yaml to debian/upstream - - [ Andreas Tille ] - * debian/upstream: enhanced citation information - - -- Olivier Sallou <[email protected]> Thu, 14 Jun 2012 12:56:33 +0200 - -circos (0.55-2) unstable; urgency=low - - * Add pre-depends on dpkg to support xz compression (required for Ubuntu) - - -- Olivier Sallou <[email protected]> Wed, 19 Oct 2011 14:16:18 +0200 - -circos (0.55-1) unstable; urgency=low - - * First debian import (Closes: #632174) - - -- Olivier Sallou <[email protected]> Wed, 29 Jun 2011 12:04:57 +0200 Copied: trunk/packages/circos/tags/0.61-2/debian/changelog (from rev 11997, trunk/packages/circos/trunk/debian/changelog) =================================================================== --- trunk/packages/circos/tags/0.61-2/debian/changelog (rev 0) +++ trunk/packages/circos/tags/0.61-2/debian/changelog 2012-08-06 07:33:04 UTC (rev 12003) @@ -0,0 +1,35 @@ +circos (0.61-2) unstable; urgency=low + + [ Olivier Sallou ] + * debian/control: + - Update description (Closes: #682802). + - Rename otf-symbols-circos to fonts-circos-symbols to fit the Font + Packages Naming Policy. + - Move to Standards 3.9.3 + + -- Olivier Sallou <[email protected]> Thu, 14 Jun 2012 13:46:15 +0200 + +circos (0.61-1) unstable; urgency=low + + [ Olivier Sallou ] + * New upstream release + + [ Charles Plessy ] + * renamed debian/upstream-metadata.yaml to debian/upstream + + [ Andreas Tille ] + * debian/upstream: enhanced citation information + + -- Olivier Sallou <[email protected]> Thu, 14 Jun 2012 12:56:33 +0200 + +circos (0.55-2) unstable; urgency=low + + * Add pre-depends on dpkg to support xz compression (required for Ubuntu) + + -- Olivier Sallou <[email protected]> Wed, 19 Oct 2011 14:16:18 +0200 + +circos (0.55-1) unstable; urgency=low + + * First debian import (Closes: #632174) + + -- Olivier Sallou <[email protected]> Wed, 29 Jun 2011 12:04:57 +0200 Deleted: trunk/packages/circos/tags/0.61-2/debian/control =================================================================== --- trunk/packages/circos/trunk/debian/control 2012-08-05 21:45:29 UTC (rev 11989) +++ trunk/packages/circos/tags/0.61-2/debian/control 2012-08-06 07:33:04 UTC (rev 12003) @@ -1,41 +0,0 @@ -Source: circos -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Olivier Sallou <[email protected]>, -DM-Upload-Allowed: yes -Build-Depends: debhelper (>= 8.0.0) -Standards-Version: 3.9.2 -Homepage: http://circos.ca/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/circos/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/circos/ - -Package: circos -Architecture: all -Pre-Depends: dpkg (>= 1.15.6) -Depends: ${misc:Depends}, ${perl:Depends}, perl (>= 5.10), otf-symbols-circos, fonts-cmu, - libregexp-common-perl, libcarp-always-perl, libconfig-general-perl (>= 2.5), - libdata-dumper-simple-perl, libgd-gd2-perl, libgetopt-simple-perl, - libmath-bezier-perl, libmath-round-perl, libparams-validate-perl, libreadonly-perl, - libset-intspan-perl (>= 1.16), liblist-allutils-perl, libfile-basedir-perl,libfile-spec-perl, - libmath-bigint-perl,libmath-vec-perl, libio-all-perl, libmath-vecstat-perl, libgraphics-colorobject-perl, - libtext-format-perl, libfont-ttf-perl -Recommends: circos-tools -Description: Package for visualizing data and information - Circos visualizes data in a circular layout — this makes Circos - ideal for exploring relationships between objects or positions. - Circos is ideal for creating publication-quality infographics - and illustrations with a high data-to-ink ratio, richly layered - data and pleasant symmetries. You have fine control each element - in the figure to tailor its focus points and detail to your audience. - -Package: otf-symbols-circos -Section: fonts -Architecture: all -Pre-Depends: dpkg (>= 1.15.6) -Depends: ${misc:Depends} -Description: Fonts used by default in Circos - Circos visualizes data in a circular layout — this makes Circos - ideal for exploring relationships between objects or positions. - . - This package contains a set of font usedby default with Circos. Copied: trunk/packages/circos/tags/0.61-2/debian/control (from rev 11996, trunk/packages/circos/trunk/debian/control) =================================================================== --- trunk/packages/circos/tags/0.61-2/debian/control (rev 0) +++ trunk/packages/circos/tags/0.61-2/debian/control 2012-08-06 07:33:04 UTC (rev 12003) @@ -0,0 +1,55 @@ +Source: circos +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Olivier Sallou <[email protected]>, +DM-Upload-Allowed: yes +Build-Depends: debhelper (>= 8.0.0) +Standards-Version: 3.9.3 +Homepage: http://circos.ca/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/circos/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/circos/ + +Package: circos +Architecture: all +Pre-Depends: dpkg (>= 1.15.6) +Depends: ${misc:Depends}, ${perl:Depends}, perl (>= 5.10), fonts-circos-symbols, fonts-cmu, + libregexp-common-perl, libcarp-always-perl, libconfig-general-perl (>= 2.5), + libdata-dumper-simple-perl, libgd-gd2-perl, libgetopt-simple-perl, + libmath-bezier-perl, libmath-round-perl, libparams-validate-perl, libreadonly-perl, + libset-intspan-perl (>= 1.16), liblist-allutils-perl, libfile-basedir-perl,libfile-spec-perl, + libmath-bigint-perl,libmath-vec-perl, libio-all-perl, libmath-vecstat-perl, libgraphics-colorobject-perl, + libtext-format-perl, libfont-ttf-perl +Recommends: circos-tools +Description: plotter for visualizing data + Circos visualizes data in a circular layout — ideal for exploring + relationships between objects or positions, and creating highly + informative publication-quality graphics. + . + This package provides the Circos plotting engine, which is command-line + driven (like gnuplot) and fully scriptable. + +Package: otf-symbols-circos +Pre-Depends: dpkg (>= 1.15.6) +Depends: fonts-circos-symbols, ${misc:Depends} +Architecture: all +Section: oldlibs +Priority: extra +Description: transitional dummy package + This package is a dummy transitional package. It can be safely removed. + + +Package: fonts-circos-symbols +Replaces: otf-symbols-circos (<< 0.61-2) +Conflicts: otf-symbols-circos (<< 0.61-2) +Provides: otf-symbols-circos +Section: fonts +Architecture: all +Pre-Depends: dpkg (>= 1.15.6) +Depends: ${misc:Depends} +Description: plotter for visualizing data - standard fonts + Circos visualizes data in a circular layout — ideal for exploring + relationships between objects or positions, and creating highly + informative publication-quality graphics. + . + This package provides a set of fonts used by default with Circos. Deleted: trunk/packages/circos/tags/0.61-2/debian/copyright =================================================================== --- trunk/packages/circos/trunk/debian/copyright 2012-08-05 21:45:29 UTC (rev 11989) +++ trunk/packages/circos/tags/0.61-2/debian/copyright 2012-08-06 07:33:04 UTC (rev 12003) @@ -1,107 +0,0 @@ -Format: http://anonscm.debian.org/viewvc/dep/web/deps/dep5.mdwn?revision=174 -Upstream-Name: circos -Source: http://circos.ca/distribution/circos-0.55.tgz - -Files: * -Copyright: Copyright 2004-2011 Martin Krzywinski -License: GPL-2+ - -Files: fonts/modern/* -Copyright: 2005, Andrey V. Panov -License: X11 with fonts exception - Permission is hereby granted, free of charge, to any person obtaining a - copy of this software and associated documentation files (the - "Software"), to deal in the Software without restriction, including - without limitation the rights to use, copy, modify, merge, publish, - distribute, and/or sell copies of the Software, and to permit persons to - whom the Software is furnished to do so, provided that the above - copyright notice(s) and this permission notice appear in all copies of - the Software and that both the above copyright notice(s) and this - permission notice appear in supporting documentation. - . - THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS - OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF - MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF - THIRD PARTY RIGHTS. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS - INCLUDED IN THIS NOTICE BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT - OR CONSEQUENTIAL DAMAGES, OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS - OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR - OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR - PERFORMANCE OF THIS SOFTWARE. - . - Except as contained in this notice, the name of a copyright holder shall - not be used in advertising or otherwise to promote the sale, use or - other dealings in this Software without prior written authorization of - the copyright holder. - . - As a special exception, if you create a document which uses these fonts, - and embed these fonts or unaltered portions of these fonts into the - document, these fonts does not by itself cause the resulting document to - be covered by the X11 License. This exception does not however - invalidate any other reasons why the document might be covered by the - X11 License. If you modify these fonts, you may extend this exception to - your version of the fonts, but you are not obligated to do so. If you do - not wish to do so, delete this exception statement from your version. -Comment: See http://bugs.debian.org/620537 - -Files: fonts/symbols/* -Copyright: Copyright 2004-2011 Martin Krzywinski -License: GPL-2+ -Comment: See etc/conts.fonf: - # All wingding and webding fonts have been replaced - # by a GPL glyph font designed by Martin Krzywinski - # for Circos. - -Files: etc/brewer.* -Copyright: Cynthia A. Brewer, Mark Harrower, Pennsylvania State University -License: Apache-2.0 - Licensed under the Apache License, Version 2.0 (the "License"); - you may not use this file except in compliance with the License. - You may obtain a copy of the License at - . - http://www.apache.org/licenses/LICENSE-2.0 - . - Unless required by applicable law or agreed to in writing, software - distributed under the License is distributed on an "AS IS" BASIS, - WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - See the License for the specific language governing permissions and - limitations under the License. -Comment: On Debian systems, the complete text of the Apache License, - Version 2.0 can be found in ‘/usr/share/common-licenses/Apache-2.0’. - -Files: debian/* -Copyright: 2011 Olivier Sallou <[email protected]> -License: GPL-2+ - This package is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This package is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/> - . - On Debian systems, the complete text of the GNU General - Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". - -License: GPL-2+ - This package is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This package is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/> - . - On Debian systems, the complete text of the GNU General - Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". - Copied: trunk/packages/circos/tags/0.61-2/debian/copyright (from rev 11993, trunk/packages/circos/trunk/debian/copyright) =================================================================== --- trunk/packages/circos/tags/0.61-2/debian/copyright (rev 0) +++ trunk/packages/circos/tags/0.61-2/debian/copyright 2012-08-06 07:33:04 UTC (rev 12003) @@ -0,0 +1,107 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: circos +Source: http://circos.ca/distribution/circos-0.55.tgz + +Files: * +Copyright: Copyright 2004-2011 Martin Krzywinski +License: GPL-2+ + +Files: fonts/modern/* +Copyright: 2005, Andrey V. Panov +License: X11 with fonts exception + Permission is hereby granted, free of charge, to any person obtaining a + copy of this software and associated documentation files (the + "Software"), to deal in the Software without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, and/or sell copies of the Software, and to permit persons to + whom the Software is furnished to do so, provided that the above + copyright notice(s) and this permission notice appear in all copies of + the Software and that both the above copyright notice(s) and this + permission notice appear in supporting documentation. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS + OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF + THIRD PARTY RIGHTS. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR HOLDERS + INCLUDED IN THIS NOTICE BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL INDIRECT + OR CONSEQUENTIAL DAMAGES, OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS + OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR + OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR + PERFORMANCE OF THIS SOFTWARE. + . + Except as contained in this notice, the name of a copyright holder shall + not be used in advertising or otherwise to promote the sale, use or + other dealings in this Software without prior written authorization of + the copyright holder. + . + As a special exception, if you create a document which uses these fonts, + and embed these fonts or unaltered portions of these fonts into the + document, these fonts does not by itself cause the resulting document to + be covered by the X11 License. This exception does not however + invalidate any other reasons why the document might be covered by the + X11 License. If you modify these fonts, you may extend this exception to + your version of the fonts, but you are not obligated to do so. If you do + not wish to do so, delete this exception statement from your version. +Comment: See http://bugs.debian.org/620537 + +Files: fonts/symbols/* +Copyright: Copyright 2004-2011 Martin Krzywinski +License: GPL-2+ +Comment: See etc/conts.fonf: + # All wingding and webding fonts have been replaced + # by a GPL glyph font designed by Martin Krzywinski + # for Circos. + +Files: etc/brewer.* +Copyright: Cynthia A. Brewer, Mark Harrower, Pennsylvania State University +License: Apache-2.0 + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + . + http://www.apache.org/licenses/LICENSE-2.0 + . + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +Comment: On Debian systems, the complete text of the Apache License, + Version 2.0 can be found in ‘/usr/share/common-licenses/Apache-2.0’. + +Files: debian/* +Copyright: 2011 Olivier Sallou <[email protected]> +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/> + . + On Debian systems, the complete text of the GNU General + Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". + +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/> + . + On Debian systems, the complete text of the GNU General + Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". + Copied: trunk/packages/circos/tags/0.61-2/debian/fonts-circos-symbols.install (from rev 11994, trunk/packages/circos/trunk/debian/fonts-circos-symbols.install) =================================================================== --- trunk/packages/circos/tags/0.61-2/debian/fonts-circos-symbols.install (rev 0) +++ trunk/packages/circos/tags/0.61-2/debian/fonts-circos-symbols.install 2012-08-06 07:33:04 UTC (rev 12003) @@ -0,0 +1 @@ +fonts/symbols usr/share/circos/fonts/ Deleted: trunk/packages/circos/tags/0.61-2/debian/otf-symbols-circos.install =================================================================== --- trunk/packages/circos/trunk/debian/otf-symbols-circos.install 2012-08-05 21:45:29 UTC (rev 11989) +++ trunk/packages/circos/tags/0.61-2/debian/otf-symbols-circos.install 2012-08-06 07:33:04 UTC (rev 12003) @@ -1 +0,0 @@ -fonts/symbols usr/share/circos/fonts/ _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
