Karsten Schöke pushed to branch master at Debian Med / python-treetime


Commits:
f102ecd5 by Karsten Schöke at 2026-06-03T08:47:28+02:00
New upstream version 0.12.1
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78005c58 by Karsten Schöke at 2026-06-03T08:48:00+02:00
Update upstream source from tag 'upstream/0.12.1'

Update to upstream version '0.12.1'
with Debian dir 5de51273aed6c2f1fb5465ea9778c6ccb15a9ffa
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e1654ddd by Karsten Schöke at 2026-06-03T08:57:55+02:00
remove obsolte syntaxwarning.patch

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dfecb60f by Karsten Schöke at 2026-06-03T08:58:23+02:00
Standards-Version: 4.7.4 (routine-update)

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5d2673a1 by Karsten Schöke at 2026-06-03T08:58:30+02:00
Changes made by cme

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622e17a6 by Karsten Schöke at 2026-06-03T08:58:32+02:00
Drop 'Rules-Requires-Root: no' from d/control (routine-update)

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c2baa423 by Karsten Schöke at 2026-06-03T07:58:40+01:00
Set upstream metadata fields: Bug-Database, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: source: upstream-metadata-missing-repository 
[debian/upstream/metadata]
See-also: 
https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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758576f4 by Karsten Schöke at 2026-06-03T08:58:42+02:00
routine-update: Ready to upload to unstable

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f1d4e760 by Karsten Schöke at 2026-06-03T09:12:31+02:00
d/watch: Rewrite in v5 format.

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52 changed files:

- .pylintrc
- Makefile
- benchmarking/sequence_algorithms.py
- benchmarking/timetree_algorithms.py
- changelog.md
- contributing.md
- debian/changelog
- debian/control
- debian/patches/series
- − debian/patches/syntaxwarning.patch
- debian/upstream/metadata
- debian/watch
- docs/source/conf.py
- docs/source/index.rst
- + pylint_source_reporter.py
- + pyproject.toml
- + pyrightconfig.json
- + release
- + scripts/extract-release-notes
- setup.py
- test/coalescent_tests.py
- test/fft_accuracy.ipynb
- test/fft_tests.py
- test/fft_timer.py
- test/test_calc_nbranches.py
- test/test_treetime.py
- test/test_vcf.py
- treetime/CLI_io.py
- treetime/__init__.py
- treetime/__main__.py
- treetime/aa_models.py
- treetime/arg.py
- treetime/argument_parser.py
- treetime/branch_len_interpolator.py
- treetime/clock_filter_methods.py
- treetime/clock_tree.py
- treetime/config.py
- treetime/distribution.py
- treetime/gtr.py
- treetime/gtr_site_specific.py
- treetime/merger_models.py
- treetime/node_interpolator.py
- treetime/nuc_models.py
- treetime/seq_utils.py
- treetime/seqgen.py
- treetime/sequence_data.py
- treetime/treeanc.py
- treetime/treeregression.py
- treetime/treetime.py
- treetime/utils.py
- treetime/vcf_utils.py
- treetime/wrappers.py


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/python-treetime/-/compare/8373fc902442bed5dd9cbcd37c167d0b51005499...f1d4e7605a1ab2015a68bac19537d3a5d1baea64

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View it on GitLab: 
https://salsa.debian.org/med-team/python-treetime/-/compare/8373fc902442bed5dd9cbcd37c167d0b51005499...f1d4e7605a1ab2015a68bac19537d3a5d1baea64
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