Andreas Tille pushed to branch master at Debian Med / nanopolish
Commits: 9ebb196b by Andreas Tille at 2026-06-11T21:17:02+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - d747aa34 by Andreas Tille at 2026-06-11T21:17:15+02:00 Changes made by cme - - - - - 6b65628e by Andreas Tille at 2026-06-11T21:17:16+02:00 Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) - - - - - 501a4580 by Andreas Tille at 2026-06-11T21:17:16+02:00 Drop 'Rules-Requires-Root: no' from d/control (routine-update) - - - - - 312a8a8f by Andreas Tille at 2026-06-11T20:17:17+01:00 Reformat the Last-Update date as ISO YYYY-MM-DD. Changes-By: lintian-brush Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/fix_remaining_python_interpreters.patch] See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html - - - - - 48199b0a by Andreas Tille at 2026-06-11T21:18:34+02:00 routine-update: Ready to upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - debian/patches/fix_remaining_python_interpreters.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,10 +1,16 @@ -nanopolish (0.14.0-3) UNRELEASED; urgency=medium +nanopolish (0.14.0-3) unstable; urgency=medium * d/watch: version=5 * libeigen 5.0 requires minimum -std=c++14 Closes: #1136251 - - -- Andreas Tille <[email protected]> Thu, 11 Jun 2026 20:47:26 +0200 + * Standards-Version: 4.7.4 (routine-update) + * Reflow Uploaders field (cme) + * Remove Priority field (cme) + * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) + * Drop 'Rules-Requires-Root: no' from d/control (routine-update) + * Reformat the Last-Update date as ISO YYYY-MM-DD. + + -- Andreas Tille <[email protected]> Thu, 11 Jun 2026 21:17:19 +0200 nanopolish (0.14.0-2) unstable; urgency=medium ===================================== debian/control ===================================== @@ -1,34 +1,37 @@ Source: nanopolish +Standards-Version: 4.7.4 Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Andreas Tille <[email protected]> +Uploaders: + Andreas Tille <[email protected]>, Section: science -Priority: optional -Build-Depends: debhelper-compat (= 13), - dh-python, - python3, - zlib1g-dev, - libfast5-dev, - libhts-dev, - libeigen3-dev, - libminimap2-dev, - libstreamvbyte-dev, - libslow5-dev -Standards-Version: 4.6.1 +Build-Depends: + debhelper-compat (= 13), + dh-sequence-python3, + python3, + zlib1g-dev, + libfast5-dev, + libhts-dev, + libeigen3-dev, + libminimap2-dev, + libstreamvbyte-dev, + libslow5-dev, Vcs-Browser: https://salsa.debian.org/med-team/nanopolish Vcs-Git: https://salsa.debian.org/med-team/nanopolish.git Homepage: https://github.com/jts/nanopolish -Rules-Requires-Root: no Package: nanopolish Architecture: any -Depends: ${shlibs:Depends}, - ${misc:Depends}, - ${python3:Depends}, - ${perl:Depends} -Recommends: python3-biopython, - python3-pysam -Suggests: perl, - make +Depends: + ${shlibs:Depends}, + ${misc:Depends}, + ${python3:Depends}, + ${perl:Depends}, +Recommends: + python3-biopython, + python3-pysam, +Suggests: + perl, + make, Description: consensus caller for nanopore sequencing data Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis ===================================== debian/patches/fix_remaining_python_interpreters.patch ===================================== @@ -2,7 +2,7 @@ Author: Andreas Tille <[email protected]> Bug-Debian: https://bugs.debian.org/931784 https://bugs.debian.org/937105 Bug-Upstream: https://github.com/jts/nanopolish/issues/626 -Last-Update: Wed, 11 Dec 2019 15:02:32 +0100 +Last-Update: 2019-12-11 Description: Fix some remaining interpreter names from python to python3 --- a/scripts/dropmodel.py ===================================== debian/rules ===================================== @@ -24,7 +24,7 @@ export MINIMAP2=external export SLOW5LIB=external %: - dh $@ --with python3 + dh $@ override_dh_auto_clean: sed -i~ 's/^.depend: .*/.depend:/' Makefile View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/e4f90e7e0a43166f6eab49d959647a02366a92ea...48199b0aded0613d6f2afb10959eb9c332fa71c5 -- View it on GitLab: https://salsa.debian.org/med-team/nanopolish/-/compare/e4f90e7e0a43166f6eab49d959647a02366a92ea...48199b0aded0613d6f2afb10959eb9c332fa71c5 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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