Andreas Tille pushed to branch master at Debian Med / unifrac-tools
Commits: 88f32a5e by Andreas Tille at 2026-06-16T22:24:42+02:00 New upstream version - - - - - f31684fe by Andreas Tille at 2026-06-16T22:24:43+02:00 New upstream version 1.6.1 - - - - - dab46a10 by Andreas Tille at 2026-06-16T22:25:22+02:00 Update upstream source from tag 'upstream/1.6.1' Update to upstream version '1.6.1' with Debian dir 3874cbafa046e5cbef0e90f5f98d7ed903e5480d - - - - - e32a507a by Andreas Tille at 2026-06-16T22:25:23+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - 835645c2 by Andreas Tille at 2026-06-16T22:25:41+02:00 Changes made by cme - - - - - 6416f8d1 by Andreas Tille at 2026-06-16T22:25:46+02:00 Drop 'Rules-Requires-Root: no' from d/control (routine-update) - - - - - 6beb3112 by Andreas Tille at 2026-06-16T21:25:53+01:00 Reformat the Last-Update date as ISO YYYY-MM-DD. Changes-By: lintian-brush Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/remove_non-free_headers.patch] Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/python3.patch] Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/soname.patch] See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html - - - - - 6fbaa350 by Andreas Tille at 2026-06-17T06:12:33+02:00 Update patches - - - - - bea1bda1 by Andreas Tille at 2026-06-17T06:59:27+02:00 Add FIXME since new upstream version is different and I'm not sure whether the patch is rebased properly. - - - - - 65ac418a by Andreas Tille at 2026-06-17T07:01:12+02:00 New dependency which needs to be packaged: https://github.com/scikit-bio/scikit-bio-binaries - - - - - 73 changed files: - + .github/workflows/blank.yml - + .github/workflows/main.yml - Makefile - README.md - ci/crawford_test.sh - + ci/test.ssu.exp - + ci/test.ssu_vaw.exp - combined/Makefile - − combined/faithpd - combined/libssu.c - − combined/ssu - debian/changelog - debian/control - − debian/patches/PR53.patch - debian/patches/baseline.patch - − debian/patches/enable-debug-flag.patch - debian/patches/enable_linking_to_shared_hdf5_lib.patch - debian/patches/hardening → debian/patches/hardening.patch - debian/patches/python3.patch - − debian/patches/remove_non-free_headers.patch - debian/patches/series - debian/patches/soname.patch - + scripts/enable_amd_compiler.sh - + scripts/enable_nv_compiler.sh - + scripts/install_amd_clang.sh - scripts/install_hpc_sdk.sh - src/Makefile - src/affinity.hpp - src/api.cpp - src/api.hpp - + src/api_compat.hpp - src/biom.cpp - src/biom.hpp - src/biom_inmem.cpp - src/biom_inmem.hpp - src/faithpd.cpp - + src/generate_skbio_alt_dyn.py - + src/generate_unifrac_accapi.py - + src/generate_unifrac_task_noclass.py - src/skbio_alt.cpp - src/skbio_alt.hpp - + src/ssu_generate_helper.py - + src/ssu_ld.c - src/su.cpp - src/task_parameters.hpp - src/test_api.cpp - + src/test_faith.tre - + src/test_faith_shear.tre - src/test_ska.cpp - src/test_su.cpp - + src/testdata/absquant.biom - + src/testdata/absquant.tree - + src/testdata/compare_unifrac_dm.py - + src/testdata/test.absquant.wn.dm - + src/testdata/test.absquant_not.wn.dm - + src/testdata/test500.unweighted_unnormalized_fp32.f.h5 - + src/testdata/validation_tests.sh - src/tree.cpp - src/tree.hpp - src/tsv.cpp - src/unifrac.cpp - src/unifrac.hpp - + src/unifrac_accapi.hpp - + src/unifrac_accapi_impl.hpp - src/unifrac_cmp.cpp - src/unifrac_cmp.hpp - src/unifrac_internal.cpp - src/unifrac_task.hpp - src/unifrac_task.cpp → src/unifrac_task_impl.hpp - + src/unifrac_task_noclass.hpp - test/Makefile - + test/capi_inmem_test.c - test/capi_test.c The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/cef3a8a1153e268a04785cfc043111a1c2650aa6...65ac418aae895faafe1ec1a7d25af50caa58caf4 -- View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/cef3a8a1153e268a04785cfc043111a1c2650aa6...65ac418aae895faafe1ec1a7d25af50caa58caf4 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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