Andreas Tille pushed to branch upstream at Debian Med / unifrac-tools


Commits:
f31684fe by Andreas Tille at 2026-06-16T22:24:43+02:00
New upstream version 1.6.1
- - - - -


62 changed files:

- + .github/workflows/blank.yml
- + .github/workflows/main.yml
- Makefile
- README.md
- ci/crawford_test.sh
- + ci/test.ssu.exp
- + ci/test.ssu_vaw.exp
- combined/Makefile
- − combined/faithpd
- combined/libssu.c
- − combined/ssu
- + scripts/enable_amd_compiler.sh
- + scripts/enable_nv_compiler.sh
- + scripts/install_amd_clang.sh
- scripts/install_hpc_sdk.sh
- src/Makefile
- src/affinity.hpp
- src/api.cpp
- src/api.hpp
- + src/api_compat.hpp
- src/biom.cpp
- src/biom.hpp
- src/biom_inmem.cpp
- src/biom_inmem.hpp
- src/faithpd.cpp
- + src/generate_skbio_alt_dyn.py
- + src/generate_unifrac_accapi.py
- + src/generate_unifrac_task_noclass.py
- src/skbio_alt.cpp
- src/skbio_alt.hpp
- + src/ssu_generate_helper.py
- + src/ssu_ld.c
- src/su.cpp
- src/task_parameters.hpp
- src/test_api.cpp
- + src/test_faith.tre
- + src/test_faith_shear.tre
- src/test_ska.cpp
- src/test_su.cpp
- + src/testdata/absquant.biom
- + src/testdata/absquant.tree
- + src/testdata/compare_unifrac_dm.py
- + src/testdata/test.absquant.wn.dm
- + src/testdata/test.absquant_not.wn.dm
- + src/testdata/test500.unweighted_unnormalized_fp32.f.h5
- + src/testdata/validation_tests.sh
- src/tree.cpp
- src/tree.hpp
- src/tsv.cpp
- src/unifrac.cpp
- src/unifrac.hpp
- + src/unifrac_accapi.hpp
- + src/unifrac_accapi_impl.hpp
- src/unifrac_cmp.cpp
- src/unifrac_cmp.hpp
- src/unifrac_internal.cpp
- src/unifrac_task.hpp
- src/unifrac_task.cpp → src/unifrac_task_impl.hpp
- + src/unifrac_task_noclass.hpp
- test/Makefile
- + test/capi_inmem_test.c
- test/capi_test.c


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/unifrac-tools/-/commit/f31684feac7754950078548319bf98028157a490

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/unifrac-tools/-/commit/f31684feac7754950078548319bf98028157a490
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