Andreas Tille pushed to branch master at Debian Med / iva
Commits: 43aeacb8 by Andreas Tille at 2026-07-07T21:52:59+02:00 d/watch: version=5 - - - - - f477eab3 by Andreas Tille at 2026-07-07T21:53:13+02:00 New upstream version 1.5.0+ds - - - - - 6cf245bd by Andreas Tille at 2026-07-07T21:53:13+02:00 New upstream version - - - - - 1e205cd4 by Andreas Tille at 2026-07-07T21:53:14+02:00 Update upstream source from tag 'upstream/1.5.0+ds' Update to upstream version '1.5.0+ds' with Debian dir c52e786a6178a5ac89008a978a94a6e1db18ea15 - - - - - 777f9ad5 by Andreas Tille at 2026-07-07T21:53:14+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - 66d60e4f by Andreas Tille at 2026-07-07T21:53:42+02:00 Changes made by cme - - - - - 8053866b by Andreas Tille at 2026-07-07T21:53:46+02:00 Drop 'Rules-Requires-Root: no' from d/control (routine-update) - - - - - da66b1bc by Andreas Tille at 2026-07-07T20:53:55+01:00 Set upstream metadata fields: Repository. Changes-By: lintian-brush Fixes: lintian: source: upstream-metadata-missing-repository [debian/upstream/metadata] See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 3684befc by Andreas Tille at 2026-07-07T22:07:25+02:00 Rebase patches - - - - - e32405e6 by Andreas Tille at 2026-07-07T22:15:22+02:00 TODO: package https://github.com/sanger-pathogens/Fastaq - - - - - 89 changed files: - .gitignore - − .travis.yml - AUTHORS - − CHANGELOG.md - − Dockerfile - LICENSE - README.md - debian/changelog - debian/control - debian/patches/disable-multithreaded-test.patch - debian/patches/disable-ram-test.patch - debian/patches/perl-shebang.patch - − debian/patches/python3.12.patch - debian/patches/samtools1.10 - debian/patches/series - debian/patches/syntax-warning.patch - debian/upstream/metadata - debian/watch - − install_dependencies.sh - iva/__init__.py - iva/assembly.py - iva/common.py - iva/contig.py - iva/contig_trim.py - iva/edge.py - − iva/egg_extract.py - iva/external_progs.py - iva/gage/getCorrectnessStats.sh - iva/gage/getMummerStats.sh - iva/graph.py - iva/kcount.py - iva/kmers.py - iva/kraken.py - iva/mapping.py - iva/mummer.py - iva/qc.py - iva/qc_external.py - iva/ratt/embl2gff.pl - iva/ratt/genbank2embl.pl - iva/ratt/main.ratt.pl - iva/ratt/ratt_correction.pm - iva/ratt/start.ratt.sh - iva/read_trim.py - iva/seed.py - iva/seed_processor.py - − iva/test_data_runner.py - − iva/test_run_data/hiv_pcr_primers.fa - − iva/test_run_data/iva_contigs_no_trimmomatic.fasta - − iva/test_run_data/iva_contigs_with_trimmomatic.fasta - − iva/test_run_data/reads_1.fq.gz - − iva/test_run_data/reads_2.fq.gz - − iva/test_run_data/reference.fasta - iva/tests/assembly_test.py - iva/tests/contig_test.py - iva/tests/contig_trim_test.py - iva/tests/data/contig_trim_test_contigs.fa - − iva/tests/data/egg_extract_test_dir.zip - − iva/tests/data/egg_extract_test_dir/.zip - − iva/tests/data/egg_extract_test_dir/file1 - − iva/tests/data/egg_extract_test_dir/iva/gage/gage1 - − iva/tests/data/egg_extract_test_dir/iva/gage/gage2 - − iva/tests/data/egg_extract_test_dir/iva/ratt/ratt1 - − iva/tests/data/egg_extract_test_dir/iva/ratt/ratt2 - − iva/tests/data/kraken_count_cds_from_embl.0 - − iva/tests/data/kraken_count_cds_from_embl.1 - − iva/tests/data/kraken_count_cds_from_embl.2 - − iva/tests/data/qc_external_test_run_gage.out - − iva/tests/data/qc_external_test_run_gage.ref.fa - − iva/tests/data/qc_external_test_run_gage.scaffs.fa - − iva/tests/data/qc_external_test_run_ratt.assembly.fa - − iva/tests/data/qc_external_test_run_ratt.embl/hiv-1.embl - iva/tests/edge_test.py - − iva/tests/egg_extract_test.py - iva/tests/external_progs_test.py - iva/tests/graph_test.py - iva/tests/kcount_test.py - iva/tests/kmers_test.py - iva/tests/kraken_test.py - iva/tests/mapping_test.py - iva/tests/mummer_test.py - − iva/tests/qc_external_test.py - iva/tests/qc_test.py - iva/tests/read_trim_test.py - iva/tests/seed_processor_test.py - iva/tests/seed_test.py - scripts/iva - scripts/iva_qc - scripts/iva_qc_make_db - setup.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/iva/-/compare/c96db0936235f59c01ae8ce816941038d4ec1f29...e32405e63d8a7db77c19a1419bacdb8e8f266fc3 -- View it on GitLab: https://salsa.debian.org/med-team/iva/-/compare/c96db0936235f59c01ae8ce816941038d4ec1f29...e32405e63d8a7db77c19a1419bacdb8e8f266fc3 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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