Andreas Tille pushed to branch master at Debian Med / ivar
Commits:
eb9912a5 by Andreas Tille at 2026-08-13T10:57:13+02:00
Standards-Version: 4.7.4 (routine-update)
- - - - -
a8626f7c by Andreas Tille at 2026-08-13T10:59:56+02:00
Changes made by cme
- - - - -
cb205b09 by Andreas Tille at 2026-08-13T11:01:14+02:00
routine-update: Ready to upload to unstable
- - - - -
e40f2613 by Andreas Tille at 2026-08-13T11:03:03+02:00
Add comment with relation to upstream issue
- - - - -
417478a2 by Andreas Tille at 2026-08-13T11:10:16+02:00
Forward patch
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/patches/Fix-warning.patch
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,10 +1,12 @@
-ivar (1.4.4+dfsg-3) UNRELEASED; urgency=medium
+ivar (1.4.4+dfsg-3) unstable; urgency=medium
* d/watch: version=5
* d/rules: Add -std=c++17
Closes: #1143665
+ * Standards-Version: 4.7.4 (routine-update)
+ * Reflow Uploaders field (cme)
- -- Andreas Tille <[email protected]> Thu, 13 Aug 2026 10:14:43 +0200
+ -- Andreas Tille <[email protected]> Thu, 13 Aug 2026 11:00:09 +0200
ivar (1.4.4+dfsg-2) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -1,20 +1,24 @@
Source: ivar
+Standards-Version: 4.7.4
Maintainer: Debian Med Packaging Team
<[email protected]>
-Uploaders: Andreas Tille <[email protected]>,
- Étienne Mollier <[email protected]>
+Uploaders:
+ Andreas Tille <[email protected]>,
+ Étienne Mollier <[email protected]>,
Section: science
-Build-Depends: debhelper-compat (= 13),
- libhts-dev
-Standards-Version: 4.7.3
+Build-Depends:
+ debhelper-compat (= 14),
+ libhts-dev,
Vcs-Browser: https://salsa.debian.org/med-team/ivar
Vcs-Git: https://salsa.debian.org/med-team/ivar.git
Homepage: https://github.com/andersen-lab/ivar
Package: ivar
Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Recommends: samtools
+Depends:
+ ${shlibs:Depends},
+ ${misc:Depends},
+Recommends:
+ samtools,
Description: functions broadly useful for viral amplicon-based sequencing
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
@@ -32,10 +36,11 @@ Description: functions broadly useful for viral
amplicon-based sequencing
Package: ivar-doc
Architecture: all
-Section: doc
-Depends: ${misc:Depends},
- node-jquery
Multi-Arch: foreign
+Section: doc
+Depends:
+ ${misc:Depends},
+ node-jquery,
Description: functions broadly useful for viral amplicon-based sequencing
(documentation)
iVar is a computational package that contains functions broadly useful
for viral amplicon-based sequencing. Additional tools for metagenomic
=====================================
debian/patches/Fix-warning.patch
=====================================
@@ -1,6 +1,8 @@
Description: Initialise array in testfile explicitly to empty string array
Author: Nilesh Patra <[email protected]>
Last-Update: 2021-08-28
+Forwarded: https://github.com/andersen-lab/ivar/issues/192
+
--- ivar.orig/tests/test_variants.cpp
+++ ivar/tests/test_variants.cpp
@@ -60,7 +60,7 @@
=====================================
debian/rules
=====================================
@@ -3,6 +3,7 @@
export LC_ALL=C.UTF-8
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+# This can be removed once upstream has fixed
https://github.com/andersen-lab/ivar/issues/191
export DEB_CXXFLAGS_MAINT_APPEND = -std=c++17
# Fix a shift against reference data on i386 causing autopkgtest regressions.
View it on GitLab:
https://salsa.debian.org/med-team/ivar/-/compare/401148dd18d079a6c404528e8b07cd5f3e7e3c74...417478a29219ca2824a3ea845e4d1708c9a9a412
--
View it on GitLab:
https://salsa.debian.org/med-team/ivar/-/compare/401148dd18d079a6c404528e8b07cd5f3e7e3c74...417478a29219ca2824a3ea845e4d1708c9a9a412
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