Karsten Schöke pushed to branch master at Debian Med / python-biopython
Commits: e6d20714 by Karsten Schöke at 2026-08-21T11:39:34+02:00 Packaging update (routine-update) - - - - - fafcf933 by Karsten Schöke at 2026-08-21T15:12:24+02:00 fix routine-update issue. - - - - - 84a20cc2 by Karsten Schöke at 2026-08-21T15:13:16+02:00 lintian-overrides are no longer needed. - - - - - cd23df90 by Karsten Schöke at 2026-08-21T15:17:02+02:00 d/rules: Fix FTBR: The second build is invoked with the `nocheck` option again. - - - - - 5ac6e41b by Karsten Schöke at 2026-08-21T19:17:56+02:00 Update changelog for 1.88+dfsg-2 release - - - - - 4 changed files: - debian/changelog - − debian/python-biopython-doc.lintian-overrides - debian/rules - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +python-biopython (1.88+dfsg-2) unstable; urgency=medium + + * Team upload. + * lintian-overrides are no longer needed. + * fix routine-update issue. + * d/rules: Fix FTBR: The second build is invoked with + the `nocheck` option again. (Closes: #1144126) + + -- Karsten Schöke <[email protected]> Fri, 21 Aug 2026 19:17:36 +0200 + python-biopython (1.88+dfsg-1) unstable; urgency=medium * Team upload. ===================================== debian/python-biopython-doc.lintian-overrides deleted ===================================== @@ -1,5 +0,0 @@ -# We really need these zero byte files for running the test suite and -# there was actually work done to keep it, since dh_installdocs ignores -# the file -python-biopython-doc: zero-byte-file-in-doc-directory [usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_002.txt] -python-biopython-doc: zero-byte-file-in-doc-directory [usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_002.chain] ===================================== debian/rules ===================================== @@ -93,18 +93,6 @@ override_dh_auto_install: dh_numpy3 -ppython3-biopython override_dh_auto_test: -ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) - #set -e \ - #; for avoid in \ - # $(EXCLUDENONFREE) \ - # $(EXCLUDENOTPACKAGED) \ - # $(EXCLUDEARCH) \ - # $(EXCLUDEDATABASE) \ - #; do mkdir -p Tests_avoid \ - #; mv Tests/test_$${avoid}.py Tests_avoid \ - #; done - # For the doc package we need a clean testsuite without all the - # remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file @@ -143,7 +131,6 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) rmdir {build_dir}/Tests_avoid; \ fi' rm -r $(LIBCIFPP_DATA_DIR) -endif DOCPKG = python-biopython-doc DOCDIR = $(CURDIR)/debian/$(DOCPKG)/usr/share/doc/$(DOCPKG) @@ -154,6 +141,10 @@ ifeq (,$(filter nodoc,$(DEB_BUILD_OPTIONS))) # dh_installdocs seems to refuse copying zero length files (for # instance Tests/Blast/tab_2226_tblastn_002.txt) but these are # needed for the tests as well + mkdir -p debian/tmp_tests + cp -a Tests debian/tmp_tests + # remove duplicated file + rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz cp -a debian/tmp_tests/* $(DOCDIR) find debian -name __pycache__ -type d | xargs rm -rf ===================================== debian/upstream/metadata ===================================== @@ -31,6 +31,3 @@ Registry: Repository: https://github.com/biopython/biopython.git Repository-Browse: https://github.com/biopython/biopython Security-Contact: https://github.com/biopython/biopython/tree/HEAD/.github/SECURITY.md -Repository: https://github.com/biopython/biopython.git -Repository-Browse: https://github.com/biopython/biopython/ -Security-Contact: https://github.com/biopython/biopython//tree/HEAD/.github/SECURITY.md View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/e358b5dc59b531d993cfef868e4617233456a4e5...5ac6e41bbc90814802a908a5d17aaf0526f87c91 -- View it on GitLab: https://salsa.debian.org/med-team/python-biopython/-/compare/e358b5dc59b531d993cfef868e4617233456a4e5...5ac6e41bbc90814802a908a5d17aaf0526f87c91 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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