Michael R. Crusoe pushed to branch master at Debian Med / python-bx
Commits: 2873d811 by Michael R. Crusoe at 2026-08-27T17:21:32+02:00 New upstream version - - - - - 4f665dd0 by Michael R. Crusoe at 2026-08-27T17:21:33+02:00 New upstream version 0.15.0 - - - - - 42da335d by Michael R. Crusoe at 2026-08-27T17:21:34+02:00 Update upstream source from tag 'upstream/0.15.0' Update to upstream version '0.15.0' with Debian dir 2b4508d5458380290f38c2b3bff6c470274a3abd - - - - - 1924ea8e by Michael R. Crusoe at 2026-08-27T17:21:35+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - 2ac9b292 by Michael R. Crusoe at 2026-08-27T17:21:45+02:00 Changes made by cme - - - - - 27862c26 by Michael R. Crusoe at 2026-08-27T16:21:47+01:00 Update watch file format version to 5. Changes-By: lintian-brush Fixes: lintian: older-debian-watch-file-standard See-also: https://lintian.debian.org/tags/older-debian-watch-file-standard.html - - - - - 25238866 by Michael R. Crusoe at 2026-08-27T16:21:48+01:00 Use GitHub template in watch file instead of explicit Source/Matching-Pattern. Changes-By: lintian-brush - - - - - 072da2ea by Michael R. Crusoe at 2026-08-27T16:21:56+01:00 Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html Fixes: lintian: upstream-metadata-missing-bug-tracking See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html - - - - - 15446363 by Michael R. Crusoe at 2026-08-27T17:21:57+02:00 debputy lint --auto-fix (routine-update) - - - - - 0d75e25a by Michael R. Crusoe at 2026-08-27T17:24:52+02:00 Refreshed patches. - - - - - 2464cd2b by Michael R. Crusoe at 2026-08-27T16:25:28+01:00 Set upstream metadata fields: Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - c60efaca by Michael R. Crusoe at 2026-08-27T17:28:08+02:00 routine-update: Ready to upload to unstable - - - - - 114 changed files: - + .flake8 - + .github/dependabot.yml - .github/workflows/deploy.yaml - .github/workflows/test.yaml - + .github/workflows/zizmor.yaml - LICENSE - debian/changelog - debian/control - debian/patches/fix_BIN_OFFSETS_MAX - debian/patches/shebang.patch - debian/patches/spelling - debian/upstream/metadata - debian/watch - doc/source/conf.py - lib/bx/__init__.py - lib/bx/align/axt.py - lib/bx/align/core.py - lib/bx/align/epo.py - lib/bx/align/epo_tests.py - lib/bx/align/lav.py - lib/bx/align/lav_tests.py - lib/bx/align/maf.py - lib/bx/align/maf_tests.py - lib/bx/align/score.py - lib/bx/align/sitemask/__init__.py - lib/bx/align/tools/__init__.py - lib/bx/arrays/array_tree_tests.py - lib/bx/bbi/bbi_file.pyx - lib/bx/binned_array.py - lib/bx/binned_array_tests.py - lib/bx/bitset_utils.py - lib/bx/cookbook/__init__.py - lib/bx/cookbook/doc_optparse.py - lib/bx/interval_index_file.py - lib/bx/interval_index_file_tests.py - lib/bx/intervals/io.py - lib/bx/intervals/operations/concat.py - lib/bx/intervals/operations/join.py - lib/bx/intervals/operations/quicksect.py - lib/bx/intervals/random_intervals.py - lib/bx/misc/seekbzip2_tests.py - lib/bx/motif/io/transfac.py - lib/bx/motif/pwm.py - lib/bx/phylo/newick.py - lib/bx/pwm/bed_score_aligned_pwm.py - lib/bx/pwm/bed_score_aligned_string.py - lib/bx/pwm/maf_select_motifs.py - lib/bx/pwm/position_weight_matrix.py - lib/bx/pwm/pwm_score_maf.py - lib/bx/pwm/pwm_score_motifs.py - lib/bx/pwm/pwm_score_positions.py - lib/bx/seq/fasta.py - lib/bx/seq/nib.py - lib/bx/seq/qdna.py - lib/bx/seq/seq.py - lib/bx/seq/seq_tests.py - lib/bx/seq/twobit.py - lib/bx/seq/twobit_tests.py - lib/bx_extras/fpconst.py - lib/bx_extras/lrucache.py - lib/bx_extras/stats.py - + mypy.ini - pyproject.toml - script_tests/line_select_tests.py - script_tests/maf_select_tests.py - scripts/axt_to_lav.py - scripts/axt_to_maf.py - scripts/bed_build_windows.py - scripts/bed_complement.py - scripts/bed_coverage.py - scripts/bed_diff_basewise_summary.py - scripts/bed_extend_to.py - scripts/bed_intersect_basewise.py - scripts/bed_merge_overlapping.py - scripts/bed_rand_intersect.py - scripts/bed_subtract_basewise.py - scripts/bnMapper.py - scripts/div_snp_table_chr.py - scripts/find_in_sorted_file.py - scripts/gene_fourfold_sites.py - scripts/lav_to_axt.py - scripts/lav_to_maf.py - scripts/mMK_bitset.py - scripts/maf_chop.py - scripts/maf_chunk.py - scripts/maf_col_counts.py - scripts/maf_col_counts_all.py - scripts/maf_covered_regions.py - scripts/maf_div_sites.py - scripts/maf_extract_ranges_indexed.py - scripts/maf_filter.py - scripts/maf_interval_alignibility.py - scripts/maf_percent_columns_matching.py - scripts/maf_percent_identity.py - scripts/maf_randomize.py - scripts/maf_species_in_all_files.py - scripts/maf_split_by_src.py - scripts/maf_tile.py - scripts/maf_tile_2.py - scripts/maf_tile_2bit.py - scripts/maf_to_axt.py - scripts/maf_to_concat_fasta.py - scripts/maf_to_fasta.py - scripts/maf_truncate.py - scripts/maf_word_frequency.py - scripts/out_to_chain.py - scripts/pretty_table.py - scripts/tfloc_summary.py - scripts/wiggle_to_array_tree.py - scripts/wiggle_to_chr_binned_array.py - scripts/wiggle_to_simple.py - − setup.cfg - tox.ini - + zizmor.yml The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/cab4e23bc9f3a326c11671eb91d431e8b73d176f...c60efaca3edd5faca41a5b8cc7e5505a060abe1c -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/cab4e23bc9f3a326c11671eb91d431e8b73d176f...c60efaca3edd5faca41a5b8cc7e5505a060abe1c You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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