Andreas Tille pushed to branch master at Debian Med / lsd2
Commits: 98d507c6 by Andreas Tille at 2026-09-15T11:02:23+02:00 Add autopkgtest - - - - - 7 changed files: - + debian/README.test - debian/changelog - debian/lsd2.docs - + debian/lsd2.examples - + debian/tests/control - + debian/tests/run-unit-test - + debian/tests/test.cpp Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,6 +1,7 @@ lsd2 (1.9.9+dfsg-2) UNRELEASED; urgency=medium * Create library packages + * Add autopkgtest -- Andreas Tille <[email protected]> Tue, 15 Sep 2026 09:11:35 +0200 ===================================== debian/lsd2.docs ===================================== @@ -1 +1,3 @@ README* +debian/README.test +debian/tests/run-unit-test ===================================== debian/lsd2.examples ===================================== @@ -0,0 +1,2 @@ +examples/* +debian/tests/test.cpp ===================================== debian/tests/control ===================================== @@ -0,0 +1,2 @@ +Tests: run-unit-test +Depends: @, g++ ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,43 @@ +#!/bin/bash +set -e + +pkg=lsd2 + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + # shellcheck disable=SC2064 + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +cp -a /usr/share/doc/${pkg}/examples/unrooted_tree_without_outgroups/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + +echo "== running lsd2 on unrooted-tree example, estimating the root ==" +lsd2 -i Dengue.phy_phyml_tree.txt -d Dengue.date -r a -s 1000 + +for suffix in result result.date.nexus result.nwk; do + test -s "Dengue.phy_phyml_tree.txt.$suffix" +done + +echo "-- result file --" +cat Dengue.phy_phyml_tree.txt.result + +grep -q 'rate' Dengue.phy_phyml_tree.txt.result +grep -q 'tMRCA' Dengue.phy_phyml_tree.txt.result + +echo "OK: lsd2 produced dating results" + + +cp -a /usr/share/doc/${pkg}/examples/test.cpp . + +echo "== compiling and linking against the shared library ==" +g++ test.cpp -o test_shared -llsd2 +./test_shared -h | grep -m1 -oE 'v\.[0-9]+(\.[0-9]+)+' + +echo "== compiling and linking against the static library ==" +g++ test.cpp -o test_static -Wl,-Bstatic -llsd2 -Wl,-Bdynamic +./test_static -h | grep -m1 -oE 'v\.[0-9]+(\.[0-9]+)+' + +echo "OK: liblsd2-dev headers/shared/static libs all usable" ===================================== debian/tests/test.cpp ===================================== @@ -0,0 +1,15 @@ +/* <iostream>/<string> and "using namespace std" have to come before + * <lsd2/lsd.h> -- that header uses istream/ostream/string + * unqualified, relying on the includer having already brought them + * in (the same way lsd2's own main.cpp does it). + */ +#include <iostream> +#include <string> +using namespace std; + +#include <lsd.h> + +int main(int argc, char** argv) { + return lsd::buildTimeTree(argc, argv); +} + View it on GitLab: https://salsa.debian.org/med-team/lsd2/-/commit/98d507c61185dbbc0087ed9f1164813ef3a59ac1 -- View it on GitLab: https://salsa.debian.org/med-team/lsd2/-/commit/98d507c61185dbbc0087ed9f1164813ef3a59ac1 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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