Andreas Tille pushed to branch upstream at Debian Med / htslib
Commits: 315870e5 by Andreas Tille at 2026-09-16T13:39:27+02:00 New upstream version 1.24+ds - - - - - 32803aac by Andreas Tille at 2026-09-16T13:44:23+02:00 New upstream version 1.24 - - - - - 172 changed files: - + CONTRIBUTING.md - LICENSE - Makefile - NEWS - annot-tsv.1 - annot-tsv.c - bcf_sr_sort.c - bgzf.c - + bgzf_internal.h - bgzip.1 - bgzip.c - config.mk.in - configure.ac - cram/cram_codecs.c - cram/cram_codecs.h - cram/cram_decode.c - cram/cram_decode.h - cram/cram_encode.c - cram/cram_external.c - cram/cram_index.c - cram/cram_io.c - cram/cram_stats.c - cram/cram_structs.h - cram/open_trace_file.c - cram/pooled_alloc.c - cram/string_alloc.c - faidx.c - header.c - header.h - hfile.c - hfile_internal.h - hfile_libcurl.c - hfile_s3.c - − hfile_s3_write.c - hts.c - hts_expr.c - hts_internal.h - hts_probe_cc.sh - htsfile.1 - htsfile.c - htslib-s3-plugin.7 - htslib.map - htslib.mk - htslib/bgzf.h - htslib/faidx.h - htslib/hfile.h - htslib/hts.h - + htslib/hts_alloc.h - htslib/hts_defs.h - htslib/kbitset.h - htslib/khash.h - htslib/ksort.h - htslib/kstring.h - htslib/sam.h - htslib/synced_bcf_reader.h - htslib/tbx.h - htslib/vcf.h - htslib_vars.mk - kstring.c - m4/hts_prog_cc_warnings.m4 - probaln.c - realn.c - ref_cache/listener.c - ref_cache/log_files.c - ref_cache/main.c - ref_cache/poll_wrap_poll.c - ref_cache/ref-cache.1 - regidx.c - sam.c - sam_internal.h - sam_mods.c - samples/mpileup.c - samples/pileup.c - samples/pileup_mod.c - simd.c - synced_bcf_reader.c - tabix.1 - tabix.c - tbx.c - + test/base_mods/MM-variants.out - + test/base_mods/MM-variants.sam - test/base_mods/base-mods.tst - + test/embed_MD.sam - + test/embed_del.sam - + test/fastq/UMI.fq - + test/fastq/UMI.sam - test/fastq/fastq.tst - + test/index3.sam - + test/index3_exp.sam - + test/mock_http_server.py - + test/tabix/bed_file.unique.out - + test/tabix/gff_file.unique.out - test/tabix/tabix.tst - + test/tabix/vcf_overlaps.bcf - + test/tabix/vcf_overlaps.no_u.out - + test/tabix/vcf_overlaps.unique.out - + test/tabix/vcf_overlaps.vcf - test/test-bcf-sr.c - test/test-vcf-api.c - test/test.pl - + test/test_alloc.c - + test/test_hfile_libcurl.c - test/test_khash.c - test/test_kstring.c - + test/tlen/README - + test/tlen/a4.cram - + test/tlen/a4.sam - + test/tlen/a5.cram - + test/tlen/a5.sam - + test/tlen/a7.cram - + test/tlen/a7.sam - + test/tlen/a7b.cram - + test/tlen/a7b.sam - + test/tlen/a8.cram - + test/tlen/a8.sam - + test/tlen/a8b.cram - + test/tlen/a8b.sam - + test/tlen/a9.cram - + test/tlen/a9.sam - + test/tlen/a9b.cram - + test/tlen/a9b.sam - + test/tlen/b7.cram - + test/tlen/b7.sam - + test/tlen/b7b.cram - + test/tlen/b7b.sam - + test/tlen/b8.cram - + test/tlen/b8.sam - + test/tlen/b8b.cram - + test/tlen/b8b.sam - + test/tlen/c7.cram - + test/tlen/c7.sam - + test/tlen/c7b.cram - + test/tlen/c7b.sam - + test/tlen/c8.cram - + test/tlen/c8.sam - + test/tlen/c8b.cram - + test/tlen/c8b.sam - + test/tlen/d4.cram - + test/tlen/d4.sam - + test/tlen/d4b.cram - + test/tlen/d4b.sam - + test/tlen/d4c.cram - + test/tlen/d4c.sam - + test/tlen/d4d.cram - + test/tlen/d4d.sam - + test/tlen/d4e.cram - + test/tlen/d4e.sam - + test/tlen/d4f.cram - + test/tlen/d4f.sam - + test/tlen/d5.cram - + test/tlen/d5.sam - + test/tlen/d5b.cram - + test/tlen/d5b.sam - + test/tlen/d5c.cram - + test/tlen/d5c.sam - + test/tlen/d5d.cram - + test/tlen/d5d.sam - + test/tlen/d5e.cram - + test/tlen/d5e.sam - + test/tlen/d5f.cram - + test/tlen/d5f.sam - + test/tlen/d7.cram - + test/tlen/d7.sam - + test/tlen/d7b.cram - + test/tlen/d7b.sam - + test/tlen/tlen.sh - + test/tlen/tlen.tst - + test/xx#repeated2.sam - thread_pool.c - vcf.c - vcfutils.c - version.sh The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/4200903ddfa69efbf675ac05fdee0e12719a40bc...32803aac59566fc28b33afce081e95a2f48ce3ae -- View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/4200903ddfa69efbf675ac05fdee0e12719a40bc...32803aac59566fc28b33afce081e95a2f48ce3ae You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
