Andreas Tille pushed to branch master at Debian Med / libsbml
Commits: 7c09e49f by Andreas Tille at 2026-09-17T22:06:07+02:00 New upstream version - - - - - 798c0863 by Andreas Tille at 2026-09-17T22:06:09+02:00 New upstream version 5.21.2+dfsg - - - - - 9c085799 by Andreas Tille at 2026-09-17T22:06:18+02:00 Update upstream source from tag 'upstream/5.21.2+dfsg' Update to upstream version '5.21.2+dfsg' with Debian dir 9c49d5d4fe717940487dd8d97712db7e52637988 - - - - - 75efaa3f by Andreas Tille at 2026-09-17T22:06:18+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - 4c0997cd by Andreas Tille at 2026-09-17T22:06:22+02:00 Changes made by cme - - - - - 6e8c25a5 by Andreas Tille at 2026-09-17T22:06:24+02:00 Drop 'Rules-Requires-Root: no' from d/control (routine-update) - - - - - f2e0b997 by Andreas Tille at 2026-09-17T21:06:32+01:00 Reformat the Last-Update date as ISO YYYY-MM-DD. Changes-By: lintian-brush Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/perl-installdirs.patch] Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/javadoc_java9.patch] Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/javadoc.patch] Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/remove_SBMLDoclet.patch] Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/fix_python_interpreter.patch] Fixes: lintian: source: invalid-dep3-format-patch-wrong-last-update [debian/patches/doxygen_mathjax_path.patch] See-also: https://lintian.debian.org/tags/invalid-dep3-format-patch-wrong-last-update.html - - - - - e6520c63 by Andreas Tille at 2026-09-17T21:06:34+01:00 Remove unnecessary Team Upload line in changelog. Changes-By: lintian-brush Fixes: lintian: source: unnecessary-team-upload [debian/changelog:2] See-also: https://lintian.debian.org/tags/unnecessary-team-upload.html - - - - - 3f0055e3 by Andreas Tille at 2026-09-17T23:16:28+02:00 routine-update: Ready to upload to unstable - - - - - 193 changed files: - .github/workflows/brief.yml - .github/workflows/extensive.yml - .github/workflows/store-artefact.yml - CMakeLists.txt - CMakeModules/FindZLIB.cmake - NEWS.txt - README.md - VERSION.txt - configure - debian/changelog - debian/control - debian/patches/doxygen_mathjax_path.patch - debian/patches/fix_python_interpreter.patch - debian/patches/javadoc.patch - debian/patches/javadoc_java9.patch - debian/patches/perl-installdirs.patch - debian/patches/remove_SBMLDoclet.patch - examples/c++/inferReactions.cpp - src/CMakeLists.txt - src/bindings/csharp/CMakeLists.txt - src/bindings/swig/libsbml.i - src/sbml/Model.cpp - src/sbml/SBMLError.h - src/sbml/SBMLErrorTable.h - src/sbml/SBase.cpp - src/sbml/annotation/ModelHistory.cpp - src/sbml/annotation/ModelHistory.h - src/sbml/common/libsbml-version.h - src/sbml/conversion/ExpressionAnalyser.cpp - src/sbml/conversion/ExpressionAnalyser.h - src/sbml/conversion/SBMLConverter.cpp - src/sbml/conversion/SBMLConverter.h - src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp - src/sbml/conversion/SBMLIdConverter.cpp - src/sbml/conversion/SBMLInferUnitsConverter.cpp - src/sbml/conversion/SBMLInitialAssignmentConverter.cpp - src/sbml/conversion/SBMLLevel1Version1Converter.cpp - src/sbml/conversion/SBMLLevelVersionConverter.cpp - src/sbml/conversion/SBMLLocalParameterConverter.cpp - src/sbml/conversion/SBMLRateOfConverter.cpp - src/sbml/conversion/SBMLRateOfConverter.h - src/sbml/conversion/SBMLRateRuleConverter.cpp - src/sbml/conversion/SBMLRateRuleConverter.h - src/sbml/conversion/SBMLReactionConverter.cpp - src/sbml/conversion/SBMLReactionConverter.h - src/sbml/conversion/SBMLRuleConverter.cpp - src/sbml/conversion/SBMLStripPackageConverter.cpp - src/sbml/conversion/SBMLUnitsConverter.cpp - + src/sbml/conversion/test/TestExpressionAnalyser.cpp - src/sbml/conversion/test/TestLevelVersionConverter.cpp - + src/sbml/conversion/test/TestRoundtripConverter.cpp - src/sbml/conversion/test/TestRunner.c - src/sbml/conversion/test/TestSBMLConverterRegistry.cpp - src/sbml/conversion/test/TestSBMLRateRuleConverter.cpp - + src/sbml/conversion/test/TestSBMLReactionConverter.cpp - src/sbml/conversion/test/test-data/mreact2.xml → src/sbml/conversion/test/test-data/invalid_010_bio.xml - − src/sbml/conversion/test/test-data/mraterules2.xml - − src/sbml/conversion/test/test-data/mraterules5.xml - + src/sbml/conversion/test/test-data/rn_rr_fail_90101.xml - + src/sbml/conversion/test/test-data/rn_rr_fail_90102_1.xml - + src/sbml/conversion/test/test-data/rn_rr_fail_90102_2.xml - + src/sbml/conversion/test/test-data/rn_rr_fail_90103.xml - + src/sbml/conversion/test/test-data/rn_rr_fail_90104.xml - + src/sbml/conversion/test/test-data/rn_rr_fail_90104_1.xml - + src/sbml/conversion/test/test-data/rn_rr_pass_90104.xml - + src/sbml/conversion/test/test-data/rr_rn_multi_compartments.xml - src/sbml/conversion/test/test-data/mreact5.xml → src/sbml/conversion/test/test-data/rr_rn_multi_compartments_reactions.xml - + src/sbml/conversion/test/test-data/test - + src/sbml/conversion/test/test-data/valid_011_bio.xml - + src/sbml/conversion/test/test-data/valid_011_rr.xml - + src/sbml/conversion/test/test-data/valid_012_bio.xml - + src/sbml/conversion/test/test-data/valid_012_rr.xml - + src/sbml/conversion/test/test-data/valid_013_bio_from_rr_original.xml - src/sbml/conversion/test/test-data/mreact.xml → src/sbml/conversion/test/test-data/valid_013_bio_original.xml - + src/sbml/conversion/test/test-data/valid_013_rr_from_bio_from_rr_original.xml - src/sbml/conversion/test/test-data/mraterules.xml → src/sbml/conversion/test/test-data/valid_013_rr_original.xml - src/sbml/conversion/test/test-data/mreact1.xml → src/sbml/conversion/test/test-data/valid_014_bio.xml - src/sbml/conversion/test/test-data/mraterules1.xml → src/sbml/conversion/test/test-data/valid_014_rr.xml - src/sbml/conversion/test/test-data/mreact4.xml → src/sbml/conversion/test/test-data/valid_015_bio.xml - src/sbml/conversion/test/test-data/mraterules4.xml → src/sbml/conversion/test/test-data/valid_015_rr.xml - src/sbml/conversion/test/test-data/mreact6.xml → src/sbml/conversion/test/test-data/valid_016_bio.xml - src/sbml/conversion/test/test-data/mraterules6.xml → src/sbml/conversion/test/test-data/valid_016_rr.xml - src/sbml/conversion/test/test-data/mreact3.xml → src/sbml/conversion/test/test-data/valid_017_bio.xml - src/sbml/conversion/test/test-data/mraterules3.xml → src/sbml/conversion/test/test-data/valid_017_rr.xml - + src/sbml/conversion/test/test-data/valid_01_bio.xml - + src/sbml/conversion/test/test-data/valid_01_rr.xml - + src/sbml/conversion/test/test-data/valid_02_bio.xml - + src/sbml/conversion/test/test-data/valid_02_rr.xml - + src/sbml/conversion/test/test-data/valid_03_bio.xml - + src/sbml/conversion/test/test-data/valid_03_rr.xml - + src/sbml/conversion/test/test-data/valid_04_bio.xml - + src/sbml/conversion/test/test-data/valid_04_rr.xml - + src/sbml/conversion/test/test-data/valid_05_bio.xml - + src/sbml/conversion/test/test-data/valid_05_rr.xml - + src/sbml/conversion/test/test-data/valid_06_bio.xml - + src/sbml/conversion/test/test-data/valid_06_rr.xml - + src/sbml/conversion/test/test-data/valid_07_bio.xml - + src/sbml/conversion/test/test-data/valid_07_rr.xml - + src/sbml/conversion/test/test-data/valid_08_bio.xml - + src/sbml/conversion/test/test-data/valid_08_rr.xml - + src/sbml/conversion/test/test-data/valid_09_bio.xml - + src/sbml/conversion/test/test-data/valid_09_rr.xml - + src/sbml/conversion/test/test-data/valid_51_bio.xml - + src/sbml/conversion/test/test-data/valid_51_rr.xml - + src/sbml/conversion/test/test-data/valid_52_bio.xml - + src/sbml/conversion/test/test-data/valid_52_rr.xml - + src/sbml/conversion/test/test-data/valid_53_bio.xml - + src/sbml/conversion/test/test-data/valid_53_rr.xml - + src/sbml/conversion/test/test-data/valid_54_bio.xml - + src/sbml/conversion/test/test-data/valid_54_rr.xml - + src/sbml/conversion/test/test-data/valid_55_bio.xml - + src/sbml/conversion/test/test-data/valid_55_rr.xml - src/sbml/html2md/html2md.cpp - src/sbml/html2md/html2md.h - src/sbml/html2md/table.cpp - src/sbml/maddy/VERSION.txt - src/sbml/maddy/checklistparser.h - src/sbml/maddy/emphasizedparser.h - src/sbml/maddy/orderedlistparser.h - src/sbml/maddy/parser.h - src/sbml/maddy/parserconfig.h - src/sbml/maddy/quoteparser.h - src/sbml/maddy/strongparser.h - src/sbml/maddy/tableparser.h - src/sbml/maddy/unorderedlistparser.h - src/sbml/math/ASTNode.cpp - src/sbml/math/ASTNode.h - src/sbml/math/test/TestChildFunctions.cpp - src/sbml/math/test/TestDerivativeFunctions.cpp - src/sbml/math/test/TestInferRnFunctions.cpp - + src/sbml/math/test/TestLevelNodeFunction.cpp - + src/sbml/math/test/TestRefactoringFunctions.cpp - src/sbml/math/test/TestRunner.c - src/sbml/packages/arrays/util/ArraysFlatteningConverter.cpp - src/sbml/packages/comp/util/CompFlatteningConverter.cpp - src/sbml/packages/distrib/sbml/DistribBase.cpp - src/sbml/packages/distrib/sbml/UncertParameter.cpp - src/sbml/packages/distrib/sbml/UncertSpan.cpp - src/sbml/packages/distrib/sbml/Uncertainty.cpp - src/sbml/packages/distrib/util/AnnotationToDistribConverter.cpp - src/sbml/packages/distrib/util/DistribToAnnotationConverter.cpp - src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp - src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp - src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h - src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp - src/sbml/packages/fbc/sbml/FbcAnd.cpp - src/sbml/packages/fbc/sbml/FbcAssociation.cpp - src/sbml/packages/fbc/sbml/FbcAssociation.h - src/sbml/packages/fbc/sbml/FbcOr.cpp - src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp - src/sbml/packages/fbc/sbml/GeneProductAssociation.h - src/sbml/packages/fbc/sbml/GeneProductRef.cpp - src/sbml/packages/fbc/sbml/KeyValuePair.cpp - src/sbml/packages/fbc/util/CobraToFbcConverter.cpp - src/sbml/packages/fbc/util/FbcToCobraConverter.cpp - src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp - src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp - src/sbml/packages/layout/sbml/CompartmentGlyph.cpp - src/sbml/packages/layout/sbml/CubicBezier.cpp - src/sbml/packages/layout/sbml/GeneralGlyph.cpp - src/sbml/packages/layout/sbml/ReactionGlyph.cpp - src/sbml/packages/layout/sbml/ReferenceGlyph.cpp - src/sbml/packages/layout/sbml/SpeciesGlyph.cpp - src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp - src/sbml/packages/layout/sbml/TextGlyph.cpp - src/sbml/packages/render/sbml/Ellipse.cpp - src/sbml/packages/render/sbml/GlobalRenderInformation.cpp - src/sbml/packages/render/sbml/GlobalStyle.cpp - src/sbml/packages/render/sbml/GradientBase.cpp - src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp - src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp - src/sbml/packages/render/sbml/Image.cpp - src/sbml/packages/render/sbml/LineEnding.cpp - src/sbml/packages/render/sbml/LinearGradient.cpp - src/sbml/packages/render/sbml/ListOfDrawables.cpp - src/sbml/packages/render/sbml/LocalRenderInformation.cpp - src/sbml/packages/render/sbml/LocalStyle.cpp - src/sbml/packages/render/sbml/Polygon.cpp - src/sbml/packages/render/sbml/RadialGradient.cpp - src/sbml/packages/render/sbml/Rectangle.cpp - src/sbml/packages/render/sbml/RenderCubicBezier.cpp - src/sbml/packages/render/sbml/RenderCurve.cpp - src/sbml/packages/render/sbml/RenderGroup.cpp - src/sbml/packages/render/sbml/RenderInformationBase.cpp - src/sbml/packages/render/sbml/Style.cpp - src/sbml/packages/render/sbml/Text.cpp - src/sbml/packages/render/sbml/Transformation2D.cpp - src/sbml/packages/render/util/RenderLayoutConverter.cpp - src/sbml/test/TestSBase.cpp - + src/sbml/test/test-data/table_example.xml - src/sbml/util/util.cpp - src/sbml/validator/constraints/AssignmentCycles.cpp - src/sbml/xml/XMLOutputStream.cpp The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/a401adf39145070ad62d1c944d7c8578fdabf43f...3f0055e3463b93da70b91a4f0ca7a2a7fbd4f8ff -- View it on GitLab: https://salsa.debian.org/med-team/libsbml/-/compare/a401adf39145070ad62d1c944d7c8578fdabf43f...3f0055e3463b93da70b91a4f0ca7a2a7fbd4f8ff You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
