Author: moeller Date: 2012-08-27 13:40:37 +0000 (Mon, 27 Aug 2012) New Revision: 12136
Added: trunk/packages/zalign/ trunk/packages/zalign/trunk/ trunk/packages/zalign/trunk/debian/ trunk/packages/zalign/trunk/debian/README.Debian trunk/packages/zalign/trunk/debian/changelog trunk/packages/zalign/trunk/debian/compat trunk/packages/zalign/trunk/debian/control trunk/packages/zalign/trunk/debian/copyright trunk/packages/zalign/trunk/debian/docs trunk/packages/zalign/trunk/debian/rules trunk/packages/zalign/trunk/debian/source/ trunk/packages/zalign/trunk/debian/source/format trunk/packages/zalign/trunk/debian/watch Log: Sometimes one is surprised about packages not found in our distribution. ZAlign is such. Added: trunk/packages/zalign/trunk/debian/README.Debian =================================================================== --- trunk/packages/zalign/trunk/debian/README.Debian (rev 0) +++ trunk/packages/zalign/trunk/debian/README.Debian 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1,7 @@ +zalign for Debian +----------------- + +ZAlign was only packaged for some imminent local need and seeks +a maintainer truly caring about it. + + -- Steffen Moeller <[email protected]> Mon, 27 Aug 2012 15:14:15 +0200 Added: trunk/packages/zalign/trunk/debian/changelog =================================================================== --- trunk/packages/zalign/trunk/debian/changelog (rev 0) +++ trunk/packages/zalign/trunk/debian/changelog 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1,5 @@ +zalign (0.9.1-1) UNRELEASED; urgency=low + + * Initial release (Closes: #nnnn) + + -- Steffen Moeller <[email protected]> Mon, 27 Aug 2012 15:14:15 +0200 Added: trunk/packages/zalign/trunk/debian/compat =================================================================== --- trunk/packages/zalign/trunk/debian/compat (rev 0) +++ trunk/packages/zalign/trunk/debian/compat 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1 @@ +8 Added: trunk/packages/zalign/trunk/debian/control =================================================================== --- trunk/packages/zalign/trunk/debian/control (rev 0) +++ trunk/packages/zalign/trunk/debian/control 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1,25 @@ +Source: zalign +Section: science +Priority: optional +Maintainer: Steffen Moeller <[email protected]> +Build-Depends: debhelper (>= 8.0.0), autotools-dev, libopenmpi-dev +Standards-Version: 3.9.3 +Homepage: https://launchpad.net/zalign +#Vcs-Svn: git://git.debian.org/collab-maint/zalign.git +#Vcs-Browser: http://git.debian.org/?p=collab-maint/zalign.git;a=summary + +Package: zalign +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: parallel local alignment of biological sequences + zAlign is a local sequence aligner, especially intended for use with + large biological DNA sequences, with more than 1Mbp (Millions of base + pairs). It uses the Smith-Waterman exact algorithm with affine gap cost + function to perform this task. + . + zAlign can be used both in distributed (clusters, for + example) or standalone environments. Currently it has + been tested on Linux and Sun Solaris, using both the MPICH + (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI + (http://www.open-mpi.org/) implementations. Ports for other Unix-like + environments are highly considered. Added: trunk/packages/zalign/trunk/debian/copyright =================================================================== --- trunk/packages/zalign/trunk/debian/copyright (rev 0) +++ trunk/packages/zalign/trunk/debian/copyright 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1,34 @@ +Format: http://dep.debian.net/deps/dep5 +Upstream-Name: zalign +Source: <url://example.com> + +Files: * +Copyright: <years> <put author's name and email here> + <years> <likewise for another author> +License: GPL-3.0+ + +Files: debian/* +Copyright: 2012 Steffen Moeller <[email protected]> +License: GPL-3.0+ + +License: GPL-3.0+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. +# Please avoid to pick license terms that are more restrictive than the +# packaged work, as it may make Debian's contributions unacceptable upstream. Added: trunk/packages/zalign/trunk/debian/docs =================================================================== --- trunk/packages/zalign/trunk/debian/docs (rev 0) +++ trunk/packages/zalign/trunk/debian/docs 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1,2 @@ +NEWS +README Added: trunk/packages/zalign/trunk/debian/rules =================================================================== --- trunk/packages/zalign/trunk/debian/rules (rev 0) +++ trunk/packages/zalign/trunk/debian/rules 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1,15 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +export CXXFLAGS=-I/usr/lib/openmpi/include + +%: + dh $@ --with autotools-dev Property changes on: trunk/packages/zalign/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/zalign/trunk/debian/source/format =================================================================== --- trunk/packages/zalign/trunk/debian/source/format (rev 0) +++ trunk/packages/zalign/trunk/debian/source/format 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/zalign/trunk/debian/watch =================================================================== --- trunk/packages/zalign/trunk/debian/watch (rev 0) +++ trunk/packages/zalign/trunk/debian/watch 2012-08-27 13:40:37 UTC (rev 12136) @@ -0,0 +1,2 @@ +version=3 +https://launchpad.net/zalign/0.9/0.9.1/+download/zalign-([0-9.]+)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
