Author: osallou Date: 2012-10-04 16:33:59 +0000 (Thu, 04 Oct 2012) New Revision: 12312
Added: trunk/packages/biomaj/tags/1.2.0-9/ trunk/packages/biomaj/tags/1.2.0-9/debian/changelog trunk/packages/biomaj/tags/1.2.0-9/debian/patches/series trunk/packages/biomaj/tags/1.2.0-9/debian/patches/set_env_file_for_debian Removed: trunk/packages/biomaj/tags/1.2.0-9/debian/changelog trunk/packages/biomaj/tags/1.2.0-9/debian/patches/series Log: [svn-buildpackage] Tagging biomaj 1.2.0-9 Deleted: trunk/packages/biomaj/tags/1.2.0-9/debian/changelog =================================================================== --- trunk/packages/biomaj/trunk/debian/changelog 2012-10-03 08:53:59 UTC (rev 12308) +++ trunk/packages/biomaj/tags/1.2.0-9/debian/changelog 2012-10-04 16:33:59 UTC (rev 12312) @@ -1,127 +0,0 @@ -biomaj (1.2.0-8) unstable; urgency=low - - [ Olivier Sallou ] - * debian/copyright: Fix copyright URL - * dbeian/control: Switch to Standards 3.9.4 - * debian/rules, debian/postinst, debian/postrm: fix conffile update - conflicting with Debian Policy (Closes: #688433). - - -- Olivier Sallou <[email protected]> Wed, 01 Aug 2012 15:59:55 +0200 - -biomaj (1.2.0-7) unstable; urgency=low - - [ Olivier Sallou ] - Patch from James Page <[email protected]> (Closes: #683517) - * Transition package to use default java implementation: - - d/rules: Specify source/target = 1.5 to ensure bytecode is backwards - compatible. - - d/control: BD on default-jdk only. Switch runtime dependency to - default-jre | java6-runtime. - - -- Olivier Sallou <[email protected]> Wed, 01 Aug 2012 14:58:41 +0200 - -biomaj (1.2.0-6) unstable; urgency=low - - [ Olivier Sallou ] - * Clean files for purge (Closes: #678490). - - [ Andreas Tille ] - * debian/upstream: Enhance upstream information (authors format, missing - fields) - - [Debconf translation updates] - * French (Olivier Sallou, proofread by the French l10n team). - - -- Olivier Sallou <[email protected]> Tue, 08 May 2012 22:46:34 +0200 - -biomaj (1.2.0-5) unstable; urgency=low - - * Add missing file to package to get the console help (Closes: #658833) - - biomaj.install - - -- Olivier Sallou <[email protected]> Wed, 01 Feb 2012 10:00:03 +0100 - -biomaj (1.2.0-4) unstable; urgency=low - - * [Olivier Sallou] - * config: remove biomaj/jdk_home, not needed anymore - - * Debconf templates and debian/control reviewed by the debian-l10n- - english team as part of the Smith review project. Closes: #653408 - * [Debconf translation updates] - * Russian (Yuri Kozlov). Closes: #656111 - * Italian (Francesca Ciceri). Closes: #656254 - * French (Olivier Sallou). Closes: #656066 - * Czech (Michal Simunek). Closes: #656670 - * Dutch; (Jeroen Schot). Closes: #657009 - * German (Chris Leick). Closes: #657024 - * Danish (Joe Hansen). Closes: #657341 - * Indonesian (Mahyuddin Susanto). Closes: #657463 - * Spanish; (Camaleón). Closes: #657491 - * Polish (Michał Kułach). Closes: #657512 - * Swedish (Martin Bagge / brother). Closes: #657548 - * Portuguese (Miguel Figueiredo). Closes: #657664 - - - -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 15:53:10 +0100 - -biomaj (1.2.0-3) unstable; urgency=low - - * Add Portuguese translation for debconf (Closes: #651680) - - Thanks to Pedro Ribeiro <[email protected]> - - -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 09:25:22 +0100 - -biomaj (1.2.0-2) unstable; urgency=low - - * Fix Mysql dependency name. - - -- Olivier Sallou <[email protected]> Fri, 11 Nov 2011 10:25:39 +0100 - -biomaj (1.2.0-1) unstable; urgency=low - - * New upstream release with new features and bug fixes. - * Change in database model, migration script ran at install - * New post processes added in default install (emboss) - - -- Olivier Sallou <[email protected]> Thu, 18 Aug 2011 09:55:23 +0200 - -biomaj (1.1.0-3) unstable; urgency=low - - * Change priority in debconf message for jdk home - * Add spanish translation of debconf: - Thanks to Camaleón <[email protected]> - Closes: #632952 - * Add sweden translation of debconf: - Thanks to Martin Bagge <[email protected]> - Closes: #628927 - * Add german translation of debconf: - Thanks to Chris Leick <[email protected]> - Closes: #629455 - * Change openjdk dependency to add default-jdk and sun jdk possible depends - Closes: #633523 - - -- Olivier Sallou <[email protected]> Thu, 11 Jul 2011 09:55:23 +0200 - -biomaj (1.1.0-2) unstable; urgency=low - - * Add russian translation of debconf: - Thanks to Yuri Kozlov <[email protected]> - Closes: #623807 - * debian/patches/fix623558_remove_pid: - Remove unnecessary pid file creation - Closes: #623558 - * debian/postrm,debian/preinst: - Issue for smooth upgrade, require old package - removal then new package install - Closes: #624284 - - - -- Olivier Sallou <[email protected]> Fri, 22 Apr 2011 16:27:11 +0200 - -biomaj (1.1.0-1) unstable; urgency=low - - * Initial release (Closes: #609038) - First Debian package, fixed copyright file to list all licenses - - -- Olivier Sallou <[email protected]> Wed, 05 Jan 2011 10:39:00 +0100 Copied: trunk/packages/biomaj/tags/1.2.0-9/debian/changelog (from rev 12311, trunk/packages/biomaj/trunk/debian/changelog) =================================================================== --- trunk/packages/biomaj/tags/1.2.0-9/debian/changelog (rev 0) +++ trunk/packages/biomaj/tags/1.2.0-9/debian/changelog 2012-10-04 16:33:59 UTC (rev 12312) @@ -0,0 +1,135 @@ +biomaj (1.2.0-9) unstable; urgency=low + + * debian/patches/set_env_file_for_debian: + Prevent env.sh file update by program at install + (Closes: #688433) + + -- Olivier Sallou <[email protected]> Wed, 03 Oct 2012 13:54:44 +0200 + +biomaj (1.2.0-8) unstable; urgency=low + + [ Olivier Sallou ] + * debian/copyright: Fix copyright URL + * debian/control: Switch to Standards 3.9.4 + * debian/rules, debian/postinst, debian/postrm: fix conffile update + conflicting with Debian Policy (Closes: #688433). + + -- Olivier Sallou <[email protected]> Wed, 01 Aug 2012 15:59:55 +0200 + +biomaj (1.2.0-7) unstable; urgency=low + + [ Olivier Sallou ] + Patch from James Page <[email protected]> (Closes: #683517) + * Transition package to use default java implementation: + - d/rules: Specify source/target = 1.5 to ensure bytecode is backwards + compatible. + - d/control: BD on default-jdk only. Switch runtime dependency to + default-jre | java6-runtime. + + -- Olivier Sallou <[email protected]> Wed, 01 Aug 2012 14:58:41 +0200 + +biomaj (1.2.0-6) unstable; urgency=low + + [ Olivier Sallou ] + * Clean files for purge (Closes: #678490). + + [ Andreas Tille ] + * debian/upstream: Enhance upstream information (authors format, missing + fields) + + [Debconf translation updates] + * French (Olivier Sallou, proofread by the French l10n team). + + -- Olivier Sallou <[email protected]> Tue, 08 May 2012 22:46:34 +0200 + +biomaj (1.2.0-5) unstable; urgency=low + + * Add missing file to package to get the console help (Closes: #658833) + - biomaj.install + + -- Olivier Sallou <[email protected]> Wed, 01 Feb 2012 10:00:03 +0100 + +biomaj (1.2.0-4) unstable; urgency=low + + * [Olivier Sallou] + * config: remove biomaj/jdk_home, not needed anymore + + * Debconf templates and debian/control reviewed by the debian-l10n- + english team as part of the Smith review project. Closes: #653408 + * [Debconf translation updates] + * Russian (Yuri Kozlov). Closes: #656111 + * Italian (Francesca Ciceri). Closes: #656254 + * French (Olivier Sallou). Closes: #656066 + * Czech (Michal Simunek). Closes: #656670 + * Dutch; (Jeroen Schot). Closes: #657009 + * German (Chris Leick). Closes: #657024 + * Danish (Joe Hansen). Closes: #657341 + * Indonesian (Mahyuddin Susanto). Closes: #657463 + * Spanish; (Camaleón). Closes: #657491 + * Polish (Michał Kułach). Closes: #657512 + * Swedish (Martin Bagge / brother). Closes: #657548 + * Portuguese (Miguel Figueiredo). Closes: #657664 + + + -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 15:53:10 +0100 + +biomaj (1.2.0-3) unstable; urgency=low + + * Add Portuguese translation for debconf (Closes: #651680) + - Thanks to Pedro Ribeiro <[email protected]> + + -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 09:25:22 +0100 + +biomaj (1.2.0-2) unstable; urgency=low + + * Fix Mysql dependency name. + + -- Olivier Sallou <[email protected]> Fri, 11 Nov 2011 10:25:39 +0100 + +biomaj (1.2.0-1) unstable; urgency=low + + * New upstream release with new features and bug fixes. + * Change in database model, migration script ran at install + * New post processes added in default install (emboss) + + -- Olivier Sallou <[email protected]> Thu, 18 Aug 2011 09:55:23 +0200 + +biomaj (1.1.0-3) unstable; urgency=low + + * Change priority in debconf message for jdk home + * Add spanish translation of debconf: + Thanks to Camaleón <[email protected]> + Closes: #632952 + * Add sweden translation of debconf: + Thanks to Martin Bagge <[email protected]> + Closes: #628927 + * Add german translation of debconf: + Thanks to Chris Leick <[email protected]> + Closes: #629455 + * Change openjdk dependency to add default-jdk and sun jdk possible depends + Closes: #633523 + + -- Olivier Sallou <[email protected]> Thu, 11 Jul 2011 09:55:23 +0200 + +biomaj (1.1.0-2) unstable; urgency=low + + * Add russian translation of debconf: + Thanks to Yuri Kozlov <[email protected]> + Closes: #623807 + * debian/patches/fix623558_remove_pid: + Remove unnecessary pid file creation + Closes: #623558 + * debian/postrm,debian/preinst: + Issue for smooth upgrade, require old package + removal then new package install + Closes: #624284 + + + -- Olivier Sallou <[email protected]> Fri, 22 Apr 2011 16:27:11 +0200 + +biomaj (1.1.0-1) unstable; urgency=low + + * Initial release (Closes: #609038) + First Debian package, fixed copyright file to list all licenses + + -- Olivier Sallou <[email protected]> Wed, 05 Jan 2011 10:39:00 +0100 Deleted: trunk/packages/biomaj/tags/1.2.0-9/debian/patches/series =================================================================== --- trunk/packages/biomaj/trunk/debian/patches/series 2012-10-03 08:53:59 UTC (rev 12308) +++ trunk/packages/biomaj/tags/1.2.0-9/debian/patches/series 2012-10-04 16:33:59 UTC (rev 12312) @@ -1 +0,0 @@ -removeSqlToolDependency Copied: trunk/packages/biomaj/tags/1.2.0-9/debian/patches/series (from rev 12310, trunk/packages/biomaj/trunk/debian/patches/series) =================================================================== --- trunk/packages/biomaj/tags/1.2.0-9/debian/patches/series (rev 0) +++ trunk/packages/biomaj/tags/1.2.0-9/debian/patches/series 2012-10-04 16:33:59 UTC (rev 12312) @@ -0,0 +1,2 @@ +removeSqlToolDependency +set_env_file_for_debian Copied: trunk/packages/biomaj/tags/1.2.0-9/debian/patches/set_env_file_for_debian (from rev 12310, trunk/packages/biomaj/trunk/debian/patches/set_env_file_for_debian) =================================================================== --- trunk/packages/biomaj/tags/1.2.0-9/debian/patches/set_env_file_for_debian (rev 0) +++ trunk/packages/biomaj/tags/1.2.0-9/debian/patches/set_env_file_for_debian 2012-10-04 16:33:59 UTC (rev 12312) @@ -0,0 +1,28 @@ +Subject: Prevent shipped file modification +Description: Program updates a shipped file at install + and upgrades. Patch sets the file once and prevent + program update. +Forwarded: not-needed +Author: Olivier Sallou <[email protected]> +Last-Updated: 2012-10-04 +Bug: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=688433 +--- a/usr/share/biomaj/bin/Configurator.java ++++ b/usr/share/biomaj/bin/Configurator.java +@@ -117,7 +117,7 @@ + /* + * Creer env.sh + */ +- createEnv(params.get("ant_home"), params.get("java_home")); ++ //createEnv(params.get("ant_home"), params.get("java_home")); + + + log("Configuration complete"); +--- a/usr/share/biomaj/bin/env.sh ++++ b/usr/share/biomaj/bin/env.sh +@@ -1 +1,4 @@ +-#!/bin/sh +\ No newline at end of file ++#!/bin/sh ++export JAVA_HOME=$(readlink -f /usr/bin/javac | sed "s:bin/javac::") ++export ANT_HOME=/usr/share/ant ++export BIOMAJ_ROOT=/usr/share/biomaj _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
