Author: sascha-guest Date: 2012-10-06 21:20:57 +0000 (Sat, 06 Oct 2012) New Revision: 12320
Added: trunk/packages/ltrsift/ trunk/packages/ltrsift/trunk/ trunk/packages/ltrsift/trunk/debian/ trunk/packages/ltrsift/trunk/debian/changelog trunk/packages/ltrsift/trunk/debian/compat trunk/packages/ltrsift/trunk/debian/control trunk/packages/ltrsift/trunk/debian/copyright trunk/packages/ltrsift/trunk/debian/docs trunk/packages/ltrsift/trunk/debian/ltrsift.docs trunk/packages/ltrsift/trunk/debian/ltrsift.install trunk/packages/ltrsift/trunk/debian/rules trunk/packages/ltrsift/trunk/debian/source/ trunk/packages/ltrsift/trunk/debian/source/format trunk/packages/ltrsift/trunk/debian/upstream trunk/packages/ltrsift/trunk/debian/watch Log: add initial package for LTRsift Property changes on: trunk/packages/ltrsift/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Added: trunk/packages/ltrsift/trunk/debian/changelog =================================================================== --- trunk/packages/ltrsift/trunk/debian/changelog (rev 0) +++ trunk/packages/ltrsift/trunk/debian/changelog 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,5 @@ +ltrsift (1.0.1-1) UNRELEASED; urgency=low + + * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + + -- Sascha Steinbiss <[email protected]> Sun, 06 Oct 2012 15:08:11 +0200 Added: trunk/packages/ltrsift/trunk/debian/compat =================================================================== --- trunk/packages/ltrsift/trunk/debian/compat (rev 0) +++ trunk/packages/ltrsift/trunk/debian/compat 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1 @@ +9 Added: trunk/packages/ltrsift/trunk/debian/control =================================================================== --- trunk/packages/ltrsift/trunk/debian/control (rev 0) +++ trunk/packages/ltrsift/trunk/debian/control 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,32 @@ +Source: ltrsift +Section: science +Priority: extra +Maintainer: Sascha Steinbiss <[email protected]> +Build-Depends: debhelper (>= 9), libgenometools0-dev (>= 1.4.2), libgtk2.0-dev, + libglib2.0-dev +Standards-Version: 3.9.3 +Homepage: http://www.zbh.uni-hamburg.de/LTRsift +Vcs-Browser: http://svn.debian.org/viewvc/debian-med/trunk/packages/ltrsift/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/ltrsift/trunk/ + +Package: ltrsift +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, libgenometools0 (>= 1.4.2), libgtk2.0-0, + libglib2.0-0, last-align, ncbi-blast+ +Description: semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations + LTRsift is a graphical desktop tool for semi-automatic postprocessing of de + novo predicted LTR retrotransposon annotations, such as the ones generated by + LTRharvest and LTRdigest. Its user-friendly interface displays LTR + retrotransposon candidates, their putative families and their internal + structure in a hierarchical fashion, allowing the user to "sift" through the + sometimes large results of de novo prediction software. It also offers + customizable filtering and classification functionality. + +Package: ltrsift-dbg +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, ltrsift (= ${binary:Version}) +Section: debug +Description: semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, with debug symbols + This package contains debug information stripped from LTRsift. + You may decide to install it to help identifying issues, typically + to help communication with upstream developers. Added: trunk/packages/ltrsift/trunk/debian/copyright =================================================================== --- trunk/packages/ltrsift/trunk/debian/copyright (rev 0) +++ trunk/packages/ltrsift/trunk/debian/copyright 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,47 @@ +Format: http://dep.debian.net/deps/dep5 +Upstream-Name: ltrsift +Source: http://www.zbh.uni-hamburg.de/LTRsift + +Files: * +Copyright: 2012 Sascha Steinbiss <[email protected]> + 2012 Sascha Kastens <[email protected]> +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/> + . + On Debian systems, the complete text of the GNU General + Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". + +# If you want to use GPL v2 or later for the /debian/* files use +# the following clauses, or change it to suit. Delete these two lines +Files: debian/* +Copyright: 2012 Sascha Steinbiss <[email protected]> +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/> + . + On Debian systems, the complete text of the GNU General + Public License version 2 can be found in "/usr/share/common-licenses/GPL-2". + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. Added: trunk/packages/ltrsift/trunk/debian/docs =================================================================== --- trunk/packages/ltrsift/trunk/debian/docs (rev 0) +++ trunk/packages/ltrsift/trunk/debian/docs 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1 @@ +README Added: trunk/packages/ltrsift/trunk/debian/ltrsift.docs =================================================================== --- trunk/packages/ltrsift/trunk/debian/ltrsift.docs (rev 0) +++ trunk/packages/ltrsift/trunk/debian/ltrsift.docs 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,4 @@ +CHANGELOG +README +LICENSE +VERSION Added: trunk/packages/ltrsift/trunk/debian/ltrsift.install =================================================================== --- trunk/packages/ltrsift/trunk/debian/ltrsift.install (rev 0) +++ trunk/packages/ltrsift/trunk/debian/ltrsift.install 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,5 @@ +usr/bin/ltrsift +usr/bin/ltrsift_encode +usr/sample_data usr/share/ltrsift +usr/filters usr/share/ltrsift + Added: trunk/packages/ltrsift/trunk/debian/rules =================================================================== --- trunk/packages/ltrsift/trunk/debian/rules (rev 0) +++ trunk/packages/ltrsift/trunk/debian/rules 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,34 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +#export DH_VERBOSE=1 +export DESTDIR=$(CURDIR)/debian/tmp +export gt_prefix=/usr + +BITS:=$(shell dpkg-architecture | grep DEB_BUILD_ARCH_BITS | cut -f 2 -d'=') +ifeq ($(BITS),64) + 64BIT:=yes +else + 64BIT:=no +endif + +%: + dh $@ --parallel + +override_dh_auto_clean: + $(MAKE) cleanup + +override_dh_auto_build: + dh_auto_build --parallel -- 64bit=$(64BIT) opt=no errorcheck=no + +override_dh_auto_test: + #dh_auto_test -- useshared=yes 64bit=$(64BIT) testthreads=5 + +override_dh_auto_install: + dh_auto_install -- 64bit=$(64BIT) opt=no errorcheck=no prefix=$(DESTDIR)/usr + +override_dh_strip: + dh_strip --dbg-package=ltrsift-dbg + +override_dh_installdocs: + dh_installdocs --exclude=license.template Property changes on: trunk/packages/ltrsift/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/ltrsift/trunk/debian/source/format =================================================================== --- trunk/packages/ltrsift/trunk/debian/source/format (rev 0) +++ trunk/packages/ltrsift/trunk/debian/source/format 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/ltrsift/trunk/debian/upstream =================================================================== --- trunk/packages/ltrsift/trunk/debian/upstream (rev 0) +++ trunk/packages/ltrsift/trunk/debian/upstream 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,21 @@ +Name: LTRsift +Bug-Database: http://ltrsift.lighthouseapp.com/projects/98871-ltrsift/tickets?q=all +Bug-Submit: http://ltrsift.lighthouseapp.com/projects/98871-ltrsift/tickets/new +Contact: Sascha Steinbiss <[email protected]> +Homepage: http://www.zbh.uni-hamburg.de/LTRsift +Reference: + Author: Steinbiss, Sascha and Kastens, Sascha and Kurtz, Stefan + Title: > + LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons. + Journal: Mobile DNA + Year: 2012 + Volume: + Number: + Pages: + DOI: + PMID: + URL: +Repository: http://github.com/satta/ltrsift +Screenshots: http://www.zbh.uni-hamburg.de/en/research/genome-informatics/software/ltrsift.html +Watch: | + https://github.com/satta/ltrsift/tags .*/zipball/v(\d[\d\.]+) Added: trunk/packages/ltrsift/trunk/debian/watch =================================================================== --- trunk/packages/ltrsift/trunk/debian/watch (rev 0) +++ trunk/packages/ltrsift/trunk/debian/watch 2012-10-06 21:20:57 UTC (rev 12320) @@ -0,0 +1,24 @@ +# Example watch control file for uscan +# Rename this file to "watch" and then you can run the "uscan" command +# to check for upstream updates and more. +# See uscan(1) for format + +# Compulsory line, this is a version 3 file +version=3 +https://github.com/satta/ltrsift/tags .*/zipball/v(\d[\d\.]+) + +# Uncomment to examine a Webpage +# <Webpage URL> <string match> +#http://www.example.com/downloads.php ltrsift-(.*)\.tar\.gz + +# Uncomment to examine a Webserver directory +#http://www.example.com/pub/ltrsift-(.*)\.tar\.gz + +# Uncommment to examine a FTP server +#ftp://ftp.example.com/pub/ltrsift-(.*)\.tar\.gz debian uupdate + +# Uncomment to find new files on sourceforge, for devscripts >= 2.9 +# http://sf.net/ltrsift/ltrsift-(.*)\.tar\.gz + +# Uncomment to find new files on GooglePages +# http://example.googlepages.com/foo.html ltrsift-(.*)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
