Author: osallou Date: 2012-10-08 12:15:27 +0000 (Mon, 08 Oct 2012) New Revision: 12331
Added: trunk/packages/biomaj-watcher/tags/1.2.0-10/ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/changelog trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/control trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/prevent_jobs_file_move trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/series trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/postinst Removed: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/changelog trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/control trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/series trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/postinst Log: [svn-buildpackage] Tagging biomaj-watcher 1.2.0-10 Deleted: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/changelog =================================================================== --- trunk/packages/biomaj-watcher/trunk/debian/changelog 2012-10-08 07:03:43 UTC (rev 12326) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/changelog 2012-10-08 12:15:27 UTC (rev 12331) @@ -1,91 +0,0 @@ -biomaj-watcher (1.2.0-9) unstable; urgency=low - - [ Olivier Sallou ] - * modifies ownership/permissions of files from the biomaj package - - debian/postinst, debian/setperms.sh, debian/unsetperms.sh, - debian/install (Closes: #682490) - * debian/control: Transition package to use default java implementation - - Thanks to James Page ([email protected]) (Closes: #683530) - - -- Olivier Sallou <[email protected]> Sun, 24 Jun 2012 15:33:54 +0200 - -biomaj-watcher (1.2.0-8) unstable; urgency=low - - [Martin Bagge <[email protected]>, debian-l10n-swedish] - * po/sv.po: Update swedish translation (Closes: #673887). - - -- Olivier Sallou <[email protected]> Sun, 24 Jun 2012 14:54:15 +0200 - -biomaj-watcher (1.2.0-7) unstable; urgency=low - - * Fix upgrade issue, deleted wrong file (Closes: #670495) - - -- Olivier Sallou <[email protected]> Wed, 09 May 2012 09:39:02 +0200 - -biomaj-watcher (1.2.0-6) unstable; urgency=low - - * Fix upgrade issue (Closes: #670495) - - -- Olivier Sallou <[email protected]> Thu, 26 Apr 2012 09:53:14 +0200 - -biomaj-watcher (1.2.0-5) unstable; urgency=low - - * Remove remaining files after purge (Closes: #670391). - [Martin Bagge <[email protected]>] - * Swedish translation (Closes: #661351). - - -- Olivier Sallou <[email protected]> Wed, 25 Apr 2012 09:10:33 +0200 - -biomaj-watcher (1.2.0-4) unstable; urgency=low - - [debian-l10n-english] - * Debconf templates and debian/control reviewed by the debian-l10n- - english team as part of the Smith review project. Closes: #653825 - [Debconf translation updates] - * Polish (Michał Kułach). Closes: #658175 - * Indonesian (Mahyuddin Susanto). Closes: #658225 - * Russian (Yuri Kozlov). Closes: #658266 - * Czech (Michal Simunek). Closes: #658412 - * Dutch; (Jeroen Schot). Closes: #658455 - * French (Olivier Sallou). Closes: #658828 - * Danish (Joe Hansen). Closes: #659164 - * German (Chris Leick). Closes: #659171 - * Portuguese (Miguel Figueiredo). Closes: #659911 - * Spanish; (Camaleón). Closes: #659945 - * Italian (Beatrice Torracca). Closes: #659997 - [Olivier Sallou] - * postinst: use invoke-rc.d instead of service to - restart tomcat (Closes: #657478) and add quotes to test - in config. - [Thorsten Alteholz] - * debian/rules: target get-orig-source added - - -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 15:53:41 +0100 - -biomaj-watcher (1.2.0-3) unstable; urgency=low - - * Add debconf translation (Closes: #651682 #650871) - - Portuguese, thanks to Pedro Ribeiro <[email protected]> - - Russian, thanks to Yuri Kozlov <[email protected]> - - -- Olivier Sallou <[email protected]> Fri, 23 Sep 2011 11:27:38 +0200 - -biomaj-watcher (1.2.0-2) unstable; urgency=low - - * Fix patch, login and jobs location not taken into account in context xml. - - -- Olivier Sallou <[email protected]> Fri, 16 Sep 2011 10:32:04 +0200 - -biomaj-watcher (1.2.0-1) unstable; urgency=low - - * New upstream release with new features (multi tenant, private banks...) - * Spanish translation - Camaleón <[email protected]> (Closes: #640096). - * Swedish translation - Martin Bagge <[email protected]> (Closes: #640057). - - -- Olivier Sallou <[email protected]> Fri, 12 Aug 2011 16:41:06 +0200 - -biomaj-watcher (1.0-1) unstable; urgency=low - - * Initial release (Closes: #609038). - - -- Olivier Sallou <[email protected]> Mon, 25 Jul 2011 01:44:27 +0200 Copied: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/changelog (from rev 12329, trunk/packages/biomaj-watcher/trunk/debian/changelog) =================================================================== --- trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/changelog (rev 0) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/changelog 2012-10-08 12:15:27 UTC (rev 12331) @@ -0,0 +1,98 @@ +biomaj-watcher (1.2.0-10) unstable; urgency=low + + * debian/postinst, debian/patches/prevent_jobs_file_move: + Prevent file deletion (Closes: #689812). + + -- Olivier Sallou <[email protected]> Wed, 15 Aug 2012 11:10:47 +0200 + +biomaj-watcher (1.2.0-9) unstable; urgency=low + + [ Olivier Sallou ] + * modifies ownership/permissions of files from the biomaj package + - debian/postinst, debian/setperms.sh, debian/unsetperms.sh, + debian/install (Closes: #682490) + * debian/control: Transition package to use default java implementation + - Thanks to James Page ([email protected]) (Closes: #683530) + + -- Olivier Sallou <[email protected]> Sun, 24 Jun 2012 15:33:54 +0200 + +biomaj-watcher (1.2.0-8) unstable; urgency=low + + [Martin Bagge <[email protected]>, debian-l10n-swedish] + * po/sv.po: Update swedish translation (Closes: #673887). + + -- Olivier Sallou <[email protected]> Sun, 24 Jun 2012 14:54:15 +0200 + +biomaj-watcher (1.2.0-7) unstable; urgency=low + + * Fix upgrade issue, deleted wrong file (Closes: #670495) + + -- Olivier Sallou <[email protected]> Wed, 09 May 2012 09:39:02 +0200 + +biomaj-watcher (1.2.0-6) unstable; urgency=low + + * Fix upgrade issue (Closes: #670495) + + -- Olivier Sallou <[email protected]> Thu, 26 Apr 2012 09:53:14 +0200 + +biomaj-watcher (1.2.0-5) unstable; urgency=low + + * Remove remaining files after purge (Closes: #670391). + [Martin Bagge <[email protected]>] + * Swedish translation (Closes: #661351). + + -- Olivier Sallou <[email protected]> Wed, 25 Apr 2012 09:10:33 +0200 + +biomaj-watcher (1.2.0-4) unstable; urgency=low + + [debian-l10n-english] + * Debconf templates and debian/control reviewed by the debian-l10n- + english team as part of the Smith review project. Closes: #653825 + [Debconf translation updates] + * Polish (Michał Kułach). Closes: #658175 + * Indonesian (Mahyuddin Susanto). Closes: #658225 + * Russian (Yuri Kozlov). Closes: #658266 + * Czech (Michal Simunek). Closes: #658412 + * Dutch; (Jeroen Schot). Closes: #658455 + * French (Olivier Sallou). Closes: #658828 + * Danish (Joe Hansen). Closes: #659164 + * German (Chris Leick). Closes: #659171 + * Portuguese (Miguel Figueiredo). Closes: #659911 + * Spanish; (Camaleón). Closes: #659945 + * Italian (Beatrice Torracca). Closes: #659997 + [Olivier Sallou] + * postinst: use invoke-rc.d instead of service to + restart tomcat (Closes: #657478) and add quotes to test + in config. + [Thorsten Alteholz] + * debian/rules: target get-orig-source added + + -- Olivier Sallou <[email protected]> Fri, 16 Dec 2011 15:53:41 +0100 + +biomaj-watcher (1.2.0-3) unstable; urgency=low + + * Add debconf translation (Closes: #651682 #650871) + - Portuguese, thanks to Pedro Ribeiro <[email protected]> + - Russian, thanks to Yuri Kozlov <[email protected]> + + -- Olivier Sallou <[email protected]> Fri, 23 Sep 2011 11:27:38 +0200 + +biomaj-watcher (1.2.0-2) unstable; urgency=low + + * Fix patch, login and jobs location not taken into account in context xml. + + -- Olivier Sallou <[email protected]> Fri, 16 Sep 2011 10:32:04 +0200 + +biomaj-watcher (1.2.0-1) unstable; urgency=low + + * New upstream release with new features (multi tenant, private banks...) + * Spanish translation - Camaleón <[email protected]> (Closes: #640096). + * Swedish translation - Martin Bagge <[email protected]> (Closes: #640057). + + -- Olivier Sallou <[email protected]> Fri, 12 Aug 2011 16:41:06 +0200 + +biomaj-watcher (1.0-1) unstable; urgency=low + + * Initial release (Closes: #609038). + + -- Olivier Sallou <[email protected]> Mon, 25 Jul 2011 01:44:27 +0200 Deleted: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/control =================================================================== --- trunk/packages/biomaj-watcher/trunk/debian/control 2012-10-08 07:03:43 UTC (rev 12326) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/control 2012-10-08 12:15:27 UTC (rev 12331) @@ -1,35 +0,0 @@ -Source: biomaj-watcher -Section: contrib/science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Olivier Sallou <[email protected]> -DM-Upload-Allowed: yes -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/biomaj-watcher/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj-watcher/trunk/ -Homepage: http://biomaj.genouest.org -Build-Depends: debhelper (>= 8),ant(>=1.7), zip, unzip -Build-Depends-Indep: default-jdk, debconf, po-debconf, liblog4j1.2-java, libcommons-lang-java, - libcommons-logging-java, libjsch-java, libjdom1-java, libquartz-java(>=1.6),libgnumail-java, - libxerces2-java, javahelper (>=0.25), biomaj (>= 1.2) -Standards-Version: 3.9.3 - -Package: biomaj-watcher -Architecture: all -Depends: ${misc:Depends}, default-jdk, tomcat6 (>=6.0.32-3), biomaj (>= 1.2), debconf, - liblog4j1.2-java, libjsch-java (>= 0.1.42),libjdom1-java (>= 1.1), libcommons-lang-java (>=2.4), - libcommons-logging-java (>=1.1),libquartz-java(>=1.6),libxerces2-java, unzip, zip, libgnumail-java -Description: biological data-bank updater - web interface - BioMAJ downloads remote data banks, checks their status and applies - transformation workflows, with consistent state, to provide ready-to-use - data for biologists and bioinformaticians. For example, it can transform - original FASTA files into BLAST indexes. It is very flexible and its - post-processing facilities can be extended very easily. - . - BioMAJ watcher provides a management interface for the BioMAJ tool. - It runs in a web container (Tomcat) and is accessible under the URL - http://hostname:portnumber/BmajWatcher - . - The web interface can give anonymous users an overview of available - data. Administrators can also use it to manage data-banks, schedule - updates via cron, view error logs, or use the integrated data-bank - properties editor. Copied: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/control (from rev 12328, trunk/packages/biomaj-watcher/trunk/debian/control) =================================================================== --- trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/control (rev 0) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/control 2012-10-08 12:15:27 UTC (rev 12331) @@ -0,0 +1,35 @@ +Source: biomaj-watcher +Section: contrib/science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Olivier Sallou <[email protected]> +DM-Upload-Allowed: yes +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/biomaj-watcher/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj-watcher/trunk/ +Homepage: http://biomaj.genouest.org +Build-Depends: debhelper (>= 8),ant(>=1.7), zip, unzip +Build-Depends-Indep: default-jdk, debconf, po-debconf, liblog4j1.2-java, libcommons-lang-java, + libcommons-logging-java, libjsch-java, libjdom1-java, libquartz-java(>=1.6),libgnumail-java, + libxerces2-java, javahelper (>=0.25), biomaj (>= 1.2) +Standards-Version: 3.9.4 + +Package: biomaj-watcher +Architecture: all +Depends: ${misc:Depends}, default-jdk, tomcat6 (>=6.0.32-3), biomaj (>= 1.2), debconf, + liblog4j1.2-java, libjsch-java (>= 0.1.42),libjdom1-java (>= 1.1), libcommons-lang-java (>=2.4), + libcommons-logging-java (>=1.1),libquartz-java(>=1.6),libxerces2-java, unzip, zip, libgnumail-java +Description: biological data-bank updater - web interface + BioMAJ downloads remote data banks, checks their status and applies + transformation workflows, with consistent state, to provide ready-to-use + data for biologists and bioinformaticians. For example, it can transform + original FASTA files into BLAST indexes. It is very flexible and its + post-processing facilities can be extended very easily. + . + BioMAJ watcher provides a management interface for the BioMAJ tool. + It runs in a web container (Tomcat) and is accessible under the URL + http://hostname:portnumber/BmajWatcher + . + The web interface can give anonymous users an overview of available + data. Administrators can also use it to manage data-banks, schedule + updates via cron, view error logs, or use the integrated data-bank + properties editor. Copied: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/prevent_jobs_file_move (from rev 12327, trunk/packages/biomaj-watcher/trunk/debian/patches/prevent_jobs_file_move) =================================================================== --- trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/prevent_jobs_file_move (rev 0) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/prevent_jobs_file_move 2012-10-08 12:15:27 UTC (rev 12331) @@ -0,0 +1,31 @@ +Subject: Upstream code remove files from package +Description: At package install, the upstream code moves some + files to config directory instead of copying them. This result + in package file deletion. + Patch removes the file deletion +Last-Updated: 2012-10-08 +Author: Olivier Sallou <[email protected]> +Forwarded: not-needed +Bug: 689812 +--- a/usr/share/biomaj-watcher/bin/UpdateToBiomaj1_2.java ++++ b/usr/share/biomaj-watcher/bin/UpdateToBiomaj1_2.java +@@ -65,15 +65,19 @@ + pw.close(); + + // Delete old jobs.xml ++ /* + if (!new File(root + "/jobs.xml").delete()) { + System.err.println("Could not delete " + root + "/jobs.xml"); + } ++ */ + + // Move jobs.xsd ++ /* + if (!new File(root + "/jobs.xsd").renameTo(new File("/etc/biomaj-watcher/jobs.xsd"))) { + System.err.println("Could not move " + root + "/jobs.xsd to /etc/biomaj-watcher/jobs.xsd"); + System.exit(3); + } ++ */ + + } catch (FileNotFoundException e) { + e.printStackTrace(); Deleted: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/series =================================================================== --- trunk/packages/biomaj-watcher/trunk/debian/patches/series 2012-10-08 07:03:43 UTC (rev 12326) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/series 2012-10-08 12:15:27 UTC (rev 12331) @@ -1,2 +0,0 @@ -fix_config_load -add_missing_lib Copied: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/series (from rev 12327, trunk/packages/biomaj-watcher/trunk/debian/patches/series) =================================================================== --- trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/series (rev 0) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/patches/series 2012-10-08 12:15:27 UTC (rev 12331) @@ -0,0 +1,3 @@ +fix_config_load +add_missing_lib +prevent_jobs_file_move Deleted: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/postinst =================================================================== --- trunk/packages/biomaj-watcher/trunk/debian/postinst 2012-10-08 07:03:43 UTC (rev 12326) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/postinst 2012-10-08 12:15:27 UTC (rev 12331) @@ -1,97 +0,0 @@ -#!/bin/sh - -set -e - -# Source debconf library. -. /usr/share/debconf/confmodule - -set_perms() { - find $1 | xargs -n 1 /usr/share/biomaj-watcher/bin/setperms.sh -} - -case "$1" in - configure) - - biomajwatcher_root="/usr/share/biomaj-watcher" - bmajconf="/etc/biomaj-watcher" - bmajroot="/usr/share/biomaj" - - db_get biomaj/login - app_login="$RET" - - db_get biomaj/ldap - use_ldap="$RET" - db_get biomaj/ldap_server - ldap_host="$RET" - db_get biomaj/ldap_dn - ldap_dn="$RET" - db_get biomaj/ldap_filter - opt_filer="$RET" - - java -cp $biomajwatcher_root/bin WatcherConfigurator bmajroot:=$bmajroot bmajconf:=$bmajconf use_ldap:=$use_ldap ldap_host:=$ldap_host ldap_dn:=$ldap_dn opt_filter:=$opt_filter app_login:=$app_login - - # Copy required libs - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/xercesImpl.jar - ln -s /usr/share/java/xercesImpl.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/xercesImpl.jar - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-lang.jar - ln -s /usr/share/java/commons-lang.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-lang.jar - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-logging.jar - ln -s /usr/share/java/commons-logging.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-logging.jar - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jdom1.jar - ln -s /usr/share/java/jdom1.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jdom1.jar - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jsch.jar - ln -s /usr/share/java/jsch.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jsch.jar - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/log4j-1.2.jar - ln -s /usr/share/java/log4j-1.2.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/log4j-1.2.jar - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/quartz.jar - ln -s /usr/share/java/quartz.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/quartz.jar - rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/gnumail.jar - ln -s /usr/share/java/gnumail.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/gnumail.jar - - #cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat6/shared/ - rm -f /var/lib/tomcat6/shared/biomaj.jar - cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat6/shared/biomaj.jar - - - # Update configuration files - set_perms /etc/biomaj/db_properties - # Update generated banks - set_perms /var/lib/biomaj - # Update logs - set_perms /var/log/biomaj - - #chown -R tomcat6 /etc/biomaj/db_properties - chown -R tomcat6 /usr/share/java/webapps/biomaj-watcher - #chmod -R 775 /etc/biomaj/db_properties - #chown -R tomcat6 /var/log/biomaj - #chmod -R 775 /var/log/biomaj - #chown -R tomcat6 /var/lib/biomaj - #chmod -R 775 /var/lib/biomaj - chown -R tomcat6 /etc/biomaj-watcher - # Update context - java -cp $biomajwatcher_root/bin UpdateToBiomaj1_2 /usr/share/java/webapps/biomaj-watcher admin - chown -R tomcat6 /etc/biomaj-watcher - #cp /etc/biomaj-watcher/BmajWatcher*.xml /var/lib/tomcat6/conf/Catalina/localhost/ - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher.xml - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml - ln -s /etc/biomaj-watcher/BmajWatcher.xml /etc/tomcat6/Catalina/localhost/BmajWatcher.xml - ln -s /etc/biomaj-watcher/BmajWatcher#logs.xml /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml - - invoke-rc.d tomcat6 restart - - - ;; - - abort-upgrade|abort-remove|abort-deconfigure) - ;; - - *) - echo "postinst called with unknown argument \`$1'" >&2 - exit 1 - ;; -esac - - -#DEBHELPER# - - Copied: trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/postinst (from rev 12327, trunk/packages/biomaj-watcher/trunk/debian/postinst) =================================================================== --- trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/postinst (rev 0) +++ trunk/packages/biomaj-watcher/tags/1.2.0-10/debian/postinst 2012-10-08 12:15:27 UTC (rev 12331) @@ -0,0 +1,99 @@ +#!/bin/sh + +set -e + +# Source debconf library. +. /usr/share/debconf/confmodule + +set_perms() { + find $1 | xargs -n 1 /usr/share/biomaj-watcher/bin/setperms.sh +} + +case "$1" in + configure) + + biomajwatcher_root="/usr/share/biomaj-watcher" + bmajconf="/etc/biomaj-watcher" + bmajroot="/usr/share/biomaj" + + db_get biomaj/login + app_login="$RET" + + db_get biomaj/ldap + use_ldap="$RET" + db_get biomaj/ldap_server + ldap_host="$RET" + db_get biomaj/ldap_dn + ldap_dn="$RET" + db_get biomaj/ldap_filter + opt_filer="$RET" + + java -cp $biomajwatcher_root/bin WatcherConfigurator bmajroot:=$bmajroot bmajconf:=$bmajconf use_ldap:=$use_ldap ldap_host:=$ldap_host ldap_dn:=$ldap_dn opt_filter:=$opt_filter app_login:=$app_login + + # Copy required libs + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/xercesImpl.jar + ln -s /usr/share/java/xercesImpl.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/xercesImpl.jar + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-lang.jar + ln -s /usr/share/java/commons-lang.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-lang.jar + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-logging.jar + ln -s /usr/share/java/commons-logging.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/commons-logging.jar + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jdom1.jar + ln -s /usr/share/java/jdom1.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jdom1.jar + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jsch.jar + ln -s /usr/share/java/jsch.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/jsch.jar + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/log4j-1.2.jar + ln -s /usr/share/java/log4j-1.2.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/log4j-1.2.jar + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/quartz.jar + ln -s /usr/share/java/quartz.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/quartz.jar + rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/gnumail.jar + ln -s /usr/share/java/gnumail.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/gnumail.jar + + #cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat6/shared/ + rm -f /var/lib/tomcat6/shared/biomaj.jar + cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat6/shared/biomaj.jar + # Install latest definition + cp /usr/share/java/webapps/biomaj-watcher/jobs.xsd /etc/biomaj-watcher/jobs.xsd + + + # Update configuration files + set_perms /etc/biomaj/db_properties + # Update generated banks + set_perms /var/lib/biomaj + # Update logs + set_perms /var/log/biomaj + + #chown -R tomcat6 /etc/biomaj/db_properties + chown -R tomcat6 /usr/share/java/webapps/biomaj-watcher + #chmod -R 775 /etc/biomaj/db_properties + #chown -R tomcat6 /var/log/biomaj + #chmod -R 775 /var/log/biomaj + #chown -R tomcat6 /var/lib/biomaj + #chmod -R 775 /var/lib/biomaj + chown -R tomcat6 /etc/biomaj-watcher + # Update context + java -cp $biomajwatcher_root/bin UpdateToBiomaj1_2 /usr/share/java/webapps/biomaj-watcher admin + chown -R tomcat6 /etc/biomaj-watcher + #cp /etc/biomaj-watcher/BmajWatcher*.xml /var/lib/tomcat6/conf/Catalina/localhost/ + rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher.xml + rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml + ln -s /etc/biomaj-watcher/BmajWatcher.xml /etc/tomcat6/Catalina/localhost/BmajWatcher.xml + ln -s /etc/biomaj-watcher/BmajWatcher#logs.xml /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml + + invoke-rc.d tomcat6 restart + + + ;; + + abort-upgrade|abort-remove|abort-deconfigure) + ;; + + *) + echo "postinst called with unknown argument \`$1'" >&2 + exit 1 + ;; +esac + + +#DEBHELPER# + + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
