Author: plessy Date: 2012-11-09 00:04:29 +0000 (Fri, 09 Nov 2012) New Revision: 12528
Added: trunk/packages/mafft/tags/6.940-1/ trunk/packages/mafft/tags/6.940-1/debian/changelog trunk/packages/mafft/tags/6.940-1/debian/compat trunk/packages/mafft/tags/6.940-1/debian/control trunk/packages/mafft/tags/6.940-1/debian/copyright trunk/packages/mafft/tags/6.940-1/debian/rules trunk/packages/mafft/tags/6.940-1/debian/tests/ Removed: trunk/packages/mafft/tags/6.940-1/debian/changelog trunk/packages/mafft/tags/6.940-1/debian/compat trunk/packages/mafft/tags/6.940-1/debian/control trunk/packages/mafft/tags/6.940-1/debian/copyright trunk/packages/mafft/tags/6.940-1/debian/rules Log: [svn-buildpackage] Tagging mafft 6.940-1 Deleted: trunk/packages/mafft/tags/6.940-1/debian/changelog =================================================================== --- trunk/packages/mafft/trunk/debian/changelog 2012-10-14 04:10:59 UTC (rev 12407) +++ trunk/packages/mafft/tags/6.940-1/debian/changelog 2012-11-09 00:04:29 UTC (rev 12528) @@ -1,153 +0,0 @@ -mafft (6.864-2) UNRELEASED; urgency=low - - * debian/upstream: - - Single Reference field instead of Reference-* - - Add additional reference from tasks file - - Authors in BibTeX conform format - - -- Andreas Tille <[email protected]> Wed, 07 Mar 2012 23:30:03 +0100 - -mafft (6.864-1) unstable; urgency=low - - * New upstream release. - * Pre-Depends on dpkg (>= 1.15.6) for xz compression support (debian/control). - * Renamed debian/README.Debian debian/README.test. - * Track the new website in debian/watch. - - -- Charles Plessy <[email protected]> Thu, 12 Jan 2012 19:00:31 +0900 - -mafft (6.860-1) unstable; urgency=low - - * New upstream release. - * Simplified debian/watch. - * Updated Homepage (debian/control). - * Compress binary package with xz (debian/control). - - -- Charles Plessy <[email protected]> Sun, 18 Sep 2011 14:43:10 +0900 - -mafft (6.859-1) unstable; urgency=low - - * New upstream release. - * Converted debian/copyright to machine-readable (DEP 5) format. - - -- Charles Plessy <[email protected]> Sat, 27 Aug 2011 12:06:00 +0900 - -mafft (6.857-1) unstable; urgency=low - - * New upstream version. - * Enable multithread, correct FHS path (debian/rules). - * Removed extra manpage copies instead of patching Makefile and - installing via debhleper (debian/patches, debian/rules, debian/manpages). - * Removed debian/dirs, not needed anymore. - * Run the tests after installation, and allow them to fail (debian/rules). - * Build when running debian/rules build (override typo, Closes: #636634). - * Corrected VCS fields in debian/control. - * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2 - (debian/control, no changes needed). - - -- Charles Plessy <[email protected]> Fri, 05 Aug 2011 09:54:09 +0900 - -mafft (6.850-1) unstable; urgency=low - - * New upstream version - * Adapted patch to new upstream - * Debhelper 8 (control + compat) - * debian/rules: Switch to dh - * debian/links: override broken symlinks created in Makefile - - -- Andreas Tille <[email protected]> Sat, 12 Mar 2011 00:02:43 +0100 - -mafft (6.833-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Wed, 17 Nov 2010 13:51:28 +0100 - -mafft (6.815-1) unstable; urgency=low - - * New upstream version - * Switch to source format 3.0 (quilt) - * Standards-Version: 3.9.1 (no changes needed) - - -- Andreas Tille <[email protected]> Thu, 05 Aug 2010 10:29:50 +0200 - -mafft (6.811-1) unstable; urgency=low - - * New upstream version - * Standards-Version: 3.8.4 (no changes needed) - - -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 13:08:06 +0200 - -mafft (6.717-1) unstable; urgency=low - - * New upstream version - * Added a few informations about Upstream in debian/upstream-metadata.yaml. - * Documented how this package is tested in debian/README.Debian. - * Refreshed debian/copyright, using the verbatim upstream license, - indented with a tabulation. - - -- Charles Plessy <[email protected]> Mon, 14 Dec 2009 13:02:59 +0900 - -mafft (6.716-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 12:39:12 +0100 - -mafft (6.713-1) unstable; urgency=low - - [ David Paleino ] - * debian/control: - - removed myself from Uploaders - - [ Andreas Tille ] - * New upstream version - * debian/control: - - Standards-Version: 3.8.3 (no changes needed) - - s/Debian-Med/Debian Med/ - - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby - script in /usr/bin using blast and lynx. - * debhelper 7 - * No need for debian/patches/Securisation-by-mktemp-usage.patch any more - * debian/watch: Handle -with.*-extensions naming - we are dealing - with the without-extensions tarball in Debian - - -- Andreas Tille <[email protected]> Mon, 28 Sep 2009 09:02:30 +0200 - -mafft (6.240-2) unstable; urgency=high - - [ Charles Plessy ] - * debian/control: - - Moved the Homepage: field out from the package's description. - - Enhances: t-coffee. - * Updated my email address. - * Securisation of the temorary files of mafft-homologs: - - debian/control: build-depend on quilt. - - debian/rules: modified to use quilt. - - debian/README.source: signals that the package uses quilt. - - debian/patches: added a patch to use non-guessable temporary files - (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs - Kinkhorst for preliminary, Kazutaka Katoh for the final implementation, - and Michael Schutte for the final review. - - debian/mafft-homologs.1*, debian/README.Debian: document that the - program is patched. - - [ David Paleino ] - * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically. - * debian/control: - - B-D updated (see above) - - added myself to Uploaders - - moved XS-Vcs-* fields to Vcs-* - - Updated to Standards-Version 3.7.3 (no changes needed) - * debian/rules: - - reflecting static build of manpages - - minor changes - - -- Charles Plessy <[email protected]> Mon, 25 Aug 2008 23:30:20 +0900 - -mafft (6.240-1) unstable; urgency=low - - * Initial release (Closes: #409640) - - -- Charles Plessy <[email protected]> Sat, 9 Jun 2007 12:06:43 +0900 - Copied: trunk/packages/mafft/tags/6.940-1/debian/changelog (from rev 12527, trunk/packages/mafft/trunk/debian/changelog) =================================================================== --- trunk/packages/mafft/tags/6.940-1/debian/changelog (rev 0) +++ trunk/packages/mafft/tags/6.940-1/debian/changelog 2012-11-09 00:04:29 UTC (rev 12528) @@ -0,0 +1,167 @@ +mafft (6.940-1) unstable; urgency=low + + [ Charles Plessy ] + * New upstream release (no new license nor copyright statement). + * Removed unnecessary build-dependance on quilt. + * Test for regressions with autopkgtest insted of doing it at build time. + (debian/control, debian/tests/control, debian/tests/with-example-data) + * debian/control: + - Removed 'Pre-Depends: dpkg (>= 1.15.6)' now that Ubuntu LTS 12.04 is out. + - Increment Standards-Version to show conformance with Policy 3.9.4. + - Removed DM-Upload-Allowed field. + - Normalised with the command cme fix dpkg-control. + - Use Debhelper 9 (also debian/compat). + * Pass dpkg build flags in debian/rules. + + [ Andreas Tille ] + * debian/upstream: + - Single Reference field instead of Reference-* + - Add additional reference from tasks file + - Authors in BibTeX conform format + + -- Charles Plessy <[email protected]> Sun, 14 Oct 2012 15:42:54 +0900 + +mafft (6.864-1) unstable; urgency=low + + * New upstream release. + * Pre-Depends on dpkg (>= 1.15.6) for xz compression support (debian/control). + * Renamed debian/README.Debian debian/README.test. + * Track the new website in debian/watch. + + -- Charles Plessy <[email protected]> Thu, 12 Jan 2012 19:00:31 +0900 + +mafft (6.860-1) unstable; urgency=low + + * New upstream release. + * Simplified debian/watch. + * Updated Homepage (debian/control). + * Compress binary package with xz (debian/control). + + -- Charles Plessy <[email protected]> Sun, 18 Sep 2011 14:43:10 +0900 + +mafft (6.859-1) unstable; urgency=low + + * New upstream release. + * Converted debian/copyright to machine-readable (DEP 5) format. + + -- Charles Plessy <[email protected]> Sat, 27 Aug 2011 12:06:00 +0900 + +mafft (6.857-1) unstable; urgency=low + + * New upstream version. + * Enable multithread, correct FHS path (debian/rules). + * Removed extra manpage copies instead of patching Makefile and + installing via debhleper (debian/patches, debian/rules, debian/manpages). + * Removed debian/dirs, not needed anymore. + * Run the tests after installation, and allow them to fail (debian/rules). + * Build when running debian/rules build (override typo, Closes: #636634). + * Corrected VCS fields in debian/control. + * Incremented Standards-Version to reflect conformance wiht Policy 3.9.2 + (debian/control, no changes needed). + + -- Charles Plessy <[email protected]> Fri, 05 Aug 2011 09:54:09 +0900 + +mafft (6.850-1) unstable; urgency=low + + * New upstream version + * Adapted patch to new upstream + * Debhelper 8 (control + compat) + * debian/rules: Switch to dh + * debian/links: override broken symlinks created in Makefile + + -- Andreas Tille <[email protected]> Sat, 12 Mar 2011 00:02:43 +0100 + +mafft (6.833-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Wed, 17 Nov 2010 13:51:28 +0100 + +mafft (6.815-1) unstable; urgency=low + + * New upstream version + * Switch to source format 3.0 (quilt) + * Standards-Version: 3.9.1 (no changes needed) + + -- Andreas Tille <[email protected]> Thu, 05 Aug 2010 10:29:50 +0200 + +mafft (6.811-1) unstable; urgency=low + + * New upstream version + * Standards-Version: 3.8.4 (no changes needed) + + -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 13:08:06 +0200 + +mafft (6.717-1) unstable; urgency=low + + * New upstream version + * Added a few informations about Upstream in debian/upstream-metadata.yaml. + * Documented how this package is tested in debian/README.Debian. + * Refreshed debian/copyright, using the verbatim upstream license, + indented with a tabulation. + + -- Charles Plessy <[email protected]> Mon, 14 Dec 2009 13:02:59 +0900 + +mafft (6.716-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 12:39:12 +0100 + +mafft (6.713-1) unstable; urgency=low + + [ David Paleino ] + * debian/control: + - removed myself from Uploaders + + [ Andreas Tille ] + * New upstream version + * debian/control: + - Standards-Version: 3.8.3 (no changes needed) + - s/Debian-Med/Debian Med/ + - Recommends: blast2, lynx, ruby (instead of Suggests - we have a Ruby + script in /usr/bin using blast and lynx. + * debhelper 7 + * No need for debian/patches/Securisation-by-mktemp-usage.patch any more + * debian/watch: Handle -with.*-extensions naming - we are dealing + with the without-extensions tarball in Debian + + -- Andreas Tille <[email protected]> Mon, 28 Sep 2009 09:02:30 +0200 + +mafft (6.240-2) unstable; urgency=high + + [ Charles Plessy ] + * debian/control: + - Moved the Homepage: field out from the package's description. + - Enhances: t-coffee. + * Updated my email address. + * Securisation of the temorary files of mafft-homologs: + - debian/control: build-depend on quilt. + - debian/rules: modified to use quilt. + - debian/README.source: signals that the package uses quilt. + - debian/patches: added a patch to use non-guessable temporary files + (Closes: #496366). Thanks to Dmitry E. Oboukhov for finding the bug, Thijs + Kinkhorst for preliminary, Kazutaka Katoh for the final implementation, + and Michael Schutte for the final review. + - debian/mafft-homologs.1*, debian/README.Debian: document that the + program is patched. + + [ David Paleino ] + * debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically. + * debian/control: + - B-D updated (see above) + - added myself to Uploaders + - moved XS-Vcs-* fields to Vcs-* + - Updated to Standards-Version 3.7.3 (no changes needed) + * debian/rules: + - reflecting static build of manpages + - minor changes + + -- Charles Plessy <[email protected]> Mon, 25 Aug 2008 23:30:20 +0900 + +mafft (6.240-1) unstable; urgency=low + + * Initial release (Closes: #409640) + + -- Charles Plessy <[email protected]> Sat, 9 Jun 2007 12:06:43 +0900 + Deleted: trunk/packages/mafft/tags/6.940-1/debian/compat =================================================================== --- trunk/packages/mafft/trunk/debian/compat 2012-10-14 04:10:59 UTC (rev 12407) +++ trunk/packages/mafft/tags/6.940-1/debian/compat 2012-11-09 00:04:29 UTC (rev 12528) @@ -1 +0,0 @@ -8 Copied: trunk/packages/mafft/tags/6.940-1/debian/compat (from rev 12423, trunk/packages/mafft/trunk/debian/compat) =================================================================== --- trunk/packages/mafft/tags/6.940-1/debian/compat (rev 0) +++ trunk/packages/mafft/tags/6.940-1/debian/compat 2012-11-09 00:04:29 UTC (rev 12528) @@ -0,0 +1 @@ +9 Deleted: trunk/packages/mafft/tags/6.940-1/debian/control =================================================================== --- trunk/packages/mafft/trunk/debian/control 2012-10-14 04:10:59 UTC (rev 12407) +++ trunk/packages/mafft/tags/6.940-1/debian/control 2012-11-09 00:04:29 UTC (rev 12528) @@ -1,39 +0,0 @@ -Source: mafft -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes -Uploaders: Charles Plessy <[email protected]>, - Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 8), quilt (>= 0.47) -Standards-Version: 3.9.2 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mafft/trunk/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mafft/trunk/ -Homepage: http://mafft.cbrc.jp/alignment/software/ - -Package: mafft -Architecture: any -# Needed until after Ubuntu 12.04 LTS. -Pre-Depends: dpkg (>= 1.15.6) -Depends: ${shlibs:Depends}, ${misc:Depends} -Recommends: blast2, lynx, ruby -Enhances: t-coffee -Description: Multiple alignment program for amino acid or nucleotide sequences - MAFFT is a multiple sequence alignment program which offers three - accuracy-oriented methods: - * L-INS-i (probably most accurate; recommended for <200 sequences; - iterative refinement method incorporating local pairwise alignment - information), - * G-INS-i (suitable for sequences of similar lengths; recommended for - <200 sequences; iterative refinement method incorporating global - pairwise alignment information), - * E-INS-i (suitable for sequences containing large unalignable regions; - recommended for <200 sequences), - and five speed-oriented methods: - * FFT-NS-i (iterative refinement method; two cycles only), - * FFT-NS-i (iterative refinement method; max. 1000 iterations), - * FFT-NS-2 (fast; progressive method), - * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive - method with a rough guide tree), - * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive - method with the PartTree algorithm). Copied: trunk/packages/mafft/tags/6.940-1/debian/control (from rev 12423, trunk/packages/mafft/trunk/debian/control) =================================================================== --- trunk/packages/mafft/tags/6.940-1/debian/control (rev 0) +++ trunk/packages/mafft/tags/6.940-1/debian/control 2012-11-09 00:04:29 UTC (rev 12528) @@ -0,0 +1,40 @@ +Source: mafft +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Charles Plessy <[email protected]>, + Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 9) +Standards-Version: 3.9.4 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mafft/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mafft/trunk/ +Homepage: http://mafft.cbrc.jp/alignment/software/ + +Package: mafft +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Recommends: blast2, + lynx, + ruby +Enhances: t-coffee +Description: Multiple alignment program for amino acid or nucleotide sequences + MAFFT is a multiple sequence alignment program which offers three + accuracy-oriented methods: + * L-INS-i (probably most accurate; recommended for <200 sequences; + iterative refinement method incorporating local pairwise alignment + information), + * G-INS-i (suitable for sequences of similar lengths; recommended for + <200 sequences; iterative refinement method incorporating global + pairwise alignment information), + * E-INS-i (suitable for sequences containing large unalignable regions; + recommended for <200 sequences), + and five speed-oriented methods: + * FFT-NS-i (iterative refinement method; two cycles only), + * FFT-NS-i (iterative refinement method; max. 1000 iterations), + * FFT-NS-2 (fast; progressive method), + * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive + method with a rough guide tree), + * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive + method with the PartTree algorithm). + Deleted: trunk/packages/mafft/tags/6.940-1/debian/copyright =================================================================== --- trunk/packages/mafft/trunk/debian/copyright 2012-10-14 04:10:59 UTC (rev 12407) +++ trunk/packages/mafft/tags/6.940-1/debian/copyright 2012-11-09 00:04:29 UTC (rev 12528) @@ -1,48 +0,0 @@ -Format: http://dep.debian.net/deps/dep5/ -Source: http://mafft.cbrc.jp/alignment/software/mafft-6.864-without-extensions-src.tgz -Comment: Debian only distributes MAFFT without its extensions. - The mafft-6.x-with-extensions-src.tgz upstream packages have an ‘extensions’ - directory, which contains code from the Vienna RNA package, that does not allow - commercial use and is therefore unsuitable for Debian. - -Files: * -Copyright: © 2009 Kazutaka Katoh -License: mafft - Redistribution and use in source and binary forms, - with or without modification, are permitted provided - that the following conditions are met: - . - Redistributions of source code must retain the - above copyright notice, this list of conditions - and the following disclaimer. Redistributions in - binary form must reproduce the above copyright - notice, this list of conditions and the following - disclaimer in the documentation and/or other - materials provided with the distribution. - . - The name of the author may not be used to endorse - or promote products derived from this software without - specific prior written permission. - . - THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" - AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, - BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF - MERCHANTABILITY AND FITNESS FOR A PARTICULAR - PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE - AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, - INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL - DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT - OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, - OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED - AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, - STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR - OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF - THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY - OF SUCH DAMAGE. - -Files: debian/* -Copyright: (C) 2007 Charles Plessy <[email protected]>, - (C) 2009 Andreas Tille <[email protected]> -License: same-as-mafft - See above - Copied: trunk/packages/mafft/tags/6.940-1/debian/copyright (from rev 12416, trunk/packages/mafft/trunk/debian/copyright) =================================================================== --- trunk/packages/mafft/tags/6.940-1/debian/copyright (rev 0) +++ trunk/packages/mafft/tags/6.940-1/debian/copyright 2012-11-09 00:04:29 UTC (rev 12528) @@ -0,0 +1,48 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://mafft.cbrc.jp/alignment/software/mafft-6.940-without-extensions-src.tgz +Comment: Debian only distributes MAFFT without its extensions. + The mafft-6.x-with-extensions-src.tgz upstream packages have an ‘extensions’ + directory, which contains code from the Vienna RNA package, that does not allow + commercial use and is therefore unsuitable for Debian. + +Files: * +Copyright: © 2009-2012 Kazutaka Katoh +License: mafft + Redistribution and use in source and binary forms, + with or without modification, are permitted provided + that the following conditions are met: + . + Redistributions of source code must retain the + above copyright notice, this list of conditions + and the following disclaimer. Redistributions in + binary form must reproduce the above copyright + notice, this list of conditions and the following + disclaimer in the documentation and/or other + materials provided with the distribution. + . + The name of the author may not be used to endorse + or promote products derived from this software without + specific prior written permission. + . + THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" + AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, + BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF + MERCHANTABILITY AND FITNESS FOR A PARTICULAR + PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE + AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, + INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT + OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, + OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED + AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, + STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR + OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF + THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY + OF SUCH DAMAGE. + +Files: debian/* +Copyright: (C) 2007 Charles Plessy <[email protected]>, + (C) 2009 Andreas Tille <[email protected]> +License: same-as-mafft + See above + Deleted: trunk/packages/mafft/tags/6.940-1/debian/rules =================================================================== --- trunk/packages/mafft/trunk/debian/rules 2012-10-14 04:10:59 UTC (rev 12407) +++ trunk/packages/mafft/tags/6.940-1/debian/rules 2012-11-09 00:04:29 UTC (rev 12528) @@ -1,33 +0,0 @@ -#!/usr/bin/make -f -# -*- makefile -*- -# Build rules for the Debian package mafft. - -# Uncomment this to turn on verbose mode. -#export DH_VERBOSE=1 - -%: - dh $@ --with quilt - -override_dh_auto_build: - $(MAKE) -C core PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft - -override_dh_clean: - [ ! -f core/Makefile ] || $(MAKE) -C core clean - rm -rf binaries/* scripts/* - dh_clean - -MAFFT = MAFFT_BINARIES=$(CURDIR)/binaries scripts/mafft - -override_dh_install: - $(MAKE) -C core PREFIX=$(CURDIR)/debian/mafft/usr/lib/mafft MANDIR=$(CURDIR)/debian/mafft/usr/share/man/man1 LIBDIR=$(CURDIR)/debian/mafft/usr/lib/mafft/lib/mafft install - rm $(CURDIR)/debian/mafft/usr/lib/mafft/lib/mafft/*.1 - # Testing Mafft… - $(MAFFT) test/sample | diff test/sample.fftns2 - - $(MAFFT) --maxiterate 100 test/sample | diff test/sample.fftnsi - - $(MAFFT) --globalpair test/sample | diff test/sample.gins1 - - $(MAFFT) --globalpair --maxiterate 100 test/sample | diff test/sample.ginsi - - $(MAFFT) --localpair test/sample | diff test/sample.lins1 - - $(MAFFT) --localpair --maxiterate 100 test/sample | diff test/sample.linsi - - -override_dh_builddeb: - dh_builddeb -- -Z xz Copied: trunk/packages/mafft/tags/6.940-1/debian/rules (from rev 12527, trunk/packages/mafft/trunk/debian/rules) =================================================================== --- trunk/packages/mafft/tags/6.940-1/debian/rules (rev 0) +++ trunk/packages/mafft/tags/6.940-1/debian/rules 2012-11-09 00:04:29 UTC (rev 12528) @@ -0,0 +1,29 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Build rules for the Debian package mafft. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ + +override_dh_auto_build: + $(MAKE) -C core PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft CFLAGS="$(shell dpkg-buildflags --get CFLAGS)" CPPFLAGS="$(shell dpkg-buildflags --get CPPFLAGS)" CXXFLAGS="$(shell dpkg-buildflags --get CXXFLAGS)" LDFLAGS="$(shell dpkg-buildflags --get LDFLAGS)" + +override_dh_clean: + [ ! -f core/Makefile ] || $(MAKE) -C core clean + rm -rf binaries/* scripts/* + dh_clean + +MAFFT = MAFFT_BINARIES=$(CURDIR)/binaries scripts/mafft + +override_dh_install: + $(MAKE) -C core PREFIX=$(CURDIR)/debian/mafft/usr/lib/mafft MANDIR=$(CURDIR)/debian/mafft/usr/share/man/man1 LIBDIR=$(CURDIR)/debian/mafft/usr/lib/mafft/lib/mafft install + rm $(CURDIR)/debian/mafft/usr/lib/mafft/lib/mafft/*.1 + +override_dh_compress: + dh_compress -X test/sample + +override_dh_builddeb: + dh_builddeb -- -Z xz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
