Author: tbooth-guest Date: 2012-11-14 10:09:03 +0000 (Wed, 14 Nov 2012) New Revision: 12533
Removed: trunk/packages/python-cogent/trunk/debian/docs trunk/packages/python-cogent/trunk/debian/links trunk/packages/python-cogent/trunk/debian/python-cogent.doc-base Modified: trunk/packages/python-cogent/trunk/debian/changelog trunk/packages/python-cogent/trunk/debian/control trunk/packages/python-cogent/trunk/debian/rules Log: New upstream, and I needed the new python-cogent to support the latest QIIME Some small changes to the build for 1.5.3 Modified: trunk/packages/python-cogent/trunk/debian/changelog =================================================================== --- trunk/packages/python-cogent/trunk/debian/changelog 2012-11-13 10:06:28 UTC (rev 12532) +++ trunk/packages/python-cogent/trunk/debian/changelog 2012-11-14 10:09:03 UTC (rev 12533) @@ -1,3 +1,12 @@ +python-cogent (1.5.3-1) precise; urgency=low + + * New upstream + * Added back python2 helper and invoked dh_numpy to sort deps + * Split out docs into separate package + * Added extra cleanup to dh_clean + + -- Tim Booth <[email protected]> Tue, 13 Nov 2012 15:26:47 +0000 + python-cogent (1.5.1-3) UNRELEASED; urgency=low * debian/upstream: Added citations Modified: trunk/packages/python-cogent/trunk/debian/control =================================================================== --- trunk/packages/python-cogent/trunk/debian/control 2012-11-13 10:06:28 UTC (rev 12532) +++ trunk/packages/python-cogent/trunk/debian/control 2012-11-14 10:09:03 UTC (rev 12533) @@ -6,14 +6,15 @@ Andreas Tille <[email protected]> Build-Depends: debhelper (>= 8), python-all-dev (>= 2.6), python-support, python-numpy (>= 1.3.0), python-sphinx, cython -Standards-Version: 3.9.2 +Standards-Version: 3.9.3 Homepage: http://pycogent.sourceforge.net/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-cogent/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-cogent/trunk/ Package: python-cogent Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, libjs-jquery, libjs-underscore, python-numpy (>= 1.3.0) +Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends} +Suggests: python-cogent-doc Description: framework for genomic biology PyCogent is a software library for genomic biology. It is a fully integrated and thoroughly tested framework for: @@ -33,3 +34,11 @@ Description: debug information for pycogent This package is needed to improve significantly the bug reports that users may feel inclined to send. + +Package: python-cogent-doc +Architecture: all +Section: doc +Depends: ${misc:Depends}, libjs-jquery, libjs-underscore +Suggests: python-cogent (= ${binary:Version}) +Description: docs for python-cogent + Documentation and examples for python-cogent Deleted: trunk/packages/python-cogent/trunk/debian/docs =================================================================== --- trunk/packages/python-cogent/trunk/debian/docs 2012-11-13 10:06:28 UTC (rev 12532) +++ trunk/packages/python-cogent/trunk/debian/docs 2012-11-14 10:09:03 UTC (rev 12533) @@ -1,3 +0,0 @@ -NumpyPortingNotes.txt -README -doc/_build/html Deleted: trunk/packages/python-cogent/trunk/debian/links =================================================================== --- trunk/packages/python-cogent/trunk/debian/links 2012-11-13 10:06:28 UTC (rev 12532) +++ trunk/packages/python-cogent/trunk/debian/links 2012-11-14 10:09:03 UTC (rev 12533) @@ -1,2 +0,0 @@ -usr/share/javascript/jquery/jquery.js usr/share/doc/python-cogent/html/_static/jquery.js -usr/share/javascript/underscore/underscore.js usr/share/doc/python-cogent/html/_static/underscore.js Deleted: trunk/packages/python-cogent/trunk/debian/python-cogent.doc-base =================================================================== --- trunk/packages/python-cogent/trunk/debian/python-cogent.doc-base 2012-11-13 10:06:28 UTC (rev 12532) +++ trunk/packages/python-cogent/trunk/debian/python-cogent.doc-base 2012-11-14 10:09:03 UTC (rev 12533) @@ -1,16 +0,0 @@ -Document: python-cogent -Title: Debian python-cogent Manual -Author: The Cogent Project -Abstract: PyCogent documentation - PyCogent is a software library for genomic biology. It is a fully - integrated and thoroughly tested framework for: controlling third-party - applications; devising workflows; querying databases; conducting novel - probabilistic analyses of biological sequence evolution; and generating - publication quality graphics. It is distinguished by many unique built-in - capabilities (such as true codon alignment) and the frequent addition of - entirely new methods for the analysis of genomic data. -Section: Science/Biology - -Format: html -Files: /usr/share/doc/python-cogent/html/* -Index: /usr/share/doc/python-cogent/html/index.html Modified: trunk/packages/python-cogent/trunk/debian/rules =================================================================== --- trunk/packages/python-cogent/trunk/debian/rules 2012-11-13 10:06:28 UTC (rev 12532) +++ trunk/packages/python-cogent/trunk/debian/rules 2012-11-14 10:09:03 UTC (rev 12533) @@ -10,13 +10,22 @@ dh $@ --with python2 override_dh_clean: + #These files are rebuilt on-the-fly + for f in `find -name '*.c'` ; do \ + head -n 1 "$$f" | grep -q '^/\* Generated by Cython' && rm "$$f" ; \ + done rm -rf build build-stamp rm -rf doc/_build dh_clean override_dh_auto_build: + dh_auto_build cd doc; $(MAKE) html +override_dh_shlibdeps: + dh_shlibdeps + dh_numpy + override_dh_compress: dh_compress --exclude=.js --exclude=.fasta --exclude=.txt --exclude=.pdb _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
