The following commit has been merged in the master branch:
commit f9cc96c9853638374245d3e8f7aeacb3643463dd
Author: Andrei Zavada <[email protected]>
Date: Mon Nov 12 11:56:43 2012 +0200
ICM
diff --git a/src/expdesign/Makefile.am b/src/expdesign/Makefile.am
index 98c0275..0e42578 100644
--- a/src/expdesign/Makefile.am
+++ b/src/expdesign/Makefile.am
@@ -7,9 +7,9 @@ noinst_LIBRARIES := liba.a
liba_a_SOURCES := \
forward-decls.hh \
+ loadsave.cc \
+ tree-scanner.cc \
primaries.cc \
- primaries-loadsave.cc \
- primaries-tree-scanner.cc \
primaries.hh \
recording.cc \
recording.hh
diff --git a/src/expdesign/primaries-loadsave.cc b/src/expdesign/loadsave.cc
similarity index 97%
rename from src/expdesign/primaries-loadsave.cc
rename to src/expdesign/loadsave.cc
index 4a194c7..d90570b 100644
--- a/src/expdesign/primaries-loadsave.cc
+++ b/src/expdesign/loadsave.cc
@@ -1,6 +1,6 @@
// ;-*-C++-*-
/*
- * File name: expdesign/primaries-loadsave.cc
+ * File name: expdesign/loadsave.cc
* Project: Aghermann
* Author: Andrei Zavada <[email protected]>
* Initial version: 2008-04-28
diff --git a/src/expdesign/primaries-tree-scanner.cc
b/src/expdesign/tree-scanner.cc
similarity index 99%
rename from src/expdesign/primaries-tree-scanner.cc
rename to src/expdesign/tree-scanner.cc
index 99c5160..902930e 100644
--- a/src/expdesign/primaries-tree-scanner.cc
+++ b/src/expdesign/tree-scanner.cc
@@ -1,6 +1,6 @@
// ;-*-C++-*-
/*
- * File name: expdesign/primaries-tree-scanner.cc
+ * File name: expdesign/tree-scanner.cc
* Project: Aghermann
* Author: Andrei Zavada <[email protected]>
* Initial version: 2012-09-19
diff --git a/src/metrics/swu.cc b/src/metrics/swu.cc
index 3c35d34..b24bcc4 100644
--- a/src/metrics/swu.cc
+++ b/src/metrics/swu.cc
@@ -144,14 +144,6 @@ compute( const SPPack& req_params,
// so that saved power is usable irrespective of what TFloat is today
valarray<double> S = to_vad( _using_F.get_signal_filtered(
_using_sig_no));
- // 1. dampen samples marked as artifacts
- // already done in get_signal_filtered()
-
- // 2. zero-mean and detrend
- // zero-mean already done in CEDFFile::get_signal_filtered()
-
- // 4. obtain power spectrum
- // prepare
for ( size_t p = 0; p < pages(); ++p ) {
nmth_bin(p, 0) =
sin(p * M_PI);
diff --git a/src/model/beersma.hh b/src/model/beersma.hh
index c00b971..94ca165 100644
--- a/src/model/beersma.hh
+++ b/src/model/beersma.hh
@@ -78,10 +78,10 @@ classic_fit( agh::CRecording&,
struct SUltradianCycle {
double r, T, d, b;
- SUltradianCycle& operator=( const SUltradianCycle& rv) = default;
+ SUltradianCycle& operator=( const SUltradianCycle&) = default;
static constexpr double
ir = 0.0001, iT = 1., id = .1, ib = .1, // the last one is
a normalized value of metric
- ur = 0.010, uT = 120., ud = 60., ub = .01,
+ ur = 0.010, uT = 130., ud = 60., ub = .01,
lr = 0.001, lT = 60., ld = -60., lb = .1;
};
@@ -148,25 +148,6 @@ class FUltradianCycle
double A = -(exp(-r*t) * (cos((t+d)/T * 2 * M_PI) - 1))
- b;
return (A > 0.) ? A : 0.;
}
-
- // // partial derivatives
- // double dr( double t) const
- // {
- // return -t * exp(-r*t) * (cos((t+d)/T) - 1);
- // }
- // double dT( double t) const
- // {
- // return (t + d) * exp(-r*t) * sin((t+d)/T) /
gsl_pow_2(T);
- // }
- // double dd( double t) const
- // {
- // return exp(-r*t) * sin((t+d)/T) / T;
- // }
- // double db( double t) const
- // {
- // return 1;
- // }
-
};
// struct SUltradianCycleWeightedData {
diff --git a/src/model/ultradian-cycle.cc b/src/model/ultradian-cycle.cc
index 03352de..3f5cccc 100644
--- a/src/model/ultradian-cycle.cc
+++ b/src/model/ultradian-cycle.cc
@@ -141,13 +141,13 @@ uc_siman_metric( void *xp, void *yp)
return agh::beersma::distance( X1, X2);
}
-void
-uc_siman_print( void *xp)
-{
- auto& P = *(SUltradianCyclePPack*)(xp);
- printf( "F r = %g, T = %g, d = %g, b = %g\n",
- P.X[0], P.X[1], P.X[2], P.X[3]);
-}
+// void
+// uc_siman_print( void *xp)
+// {
+// auto& P = *(SUltradianCyclePPack*)(xp);
+// printf( "F r = %g, T = %g, d = %g, b = %g\n",
+// P.X[0], P.X[1], P.X[2], P.X[3]);
+// }
} // inline namespace
diff --git a/src/ui/Makefile.am b/src/ui/Makefile.am
index 7ffc9a2..87af932 100644
--- a/src/ui/Makefile.am
+++ b/src/ui/Makefile.am
@@ -10,19 +10,19 @@ noinst_LIBRARIES := liba.a
liba_a_SOURCES := \
forward-decls.hh \
- ui.hh \
- ui++.hh \
- misc.hh \
globals.hh \
- libcommon.cc
+ libcommon.cc \
+ misc.hh \
+ ui++.hh \
+ ui.hh
if DO_PCH
BUILT_SOURCES := \
- ui.hh.gch \
- ui++.hh.gch \
- misc.hh.gch \
+ forward-decls.hh.gch \
globals.hh.gch \
- forward-decls.hh.gch
+ misc.hh.gch \
+ ui++.hh.gch \
+ ui.hh.gch
%.hh.gch: %.hh
$(CXXCOMPILE) -c $<
CLEANFILES := \
diff --git a/src/ui/libcommon.cc b/src/ui/libcommon.cc
index 52731a8..ad43745 100644
--- a/src/ui/libcommon.cc
+++ b/src/ui/libcommon.cc
@@ -69,7 +69,6 @@ prepare_for_expdesign()
return -1;
}
g_resources_register( gresource);
- printf( "Loaded " PACKAGE_DATADIR "/" PACKAGE "/"
AGH_UI_GRESOURCE_FILE "\n");
return 0;
}
diff --git a/src/ui/mf/Makefile.am b/src/ui/mf/Makefile.am
index e640c29..9560715 100644
--- a/src/ui/mf/Makefile.am
+++ b/src/ui/mf/Makefile.am
@@ -8,11 +8,11 @@ AM_CXXFLAGS := \
noinst_LIBRARIES := liba.a
liba_a_SOURCES := \
- mf.hh \
- mf_cb.hh \
- mf.cc \
mf-construct.cc \
- mf_cb.cc
+ mf.cc \
+ mf.hh \
+ mf_cb.cc \
+ mf_cb.hh
if DO_PCH
BUILT_SOURCES := \
diff --git a/src/ui/mw/Makefile.am b/src/ui/mw/Makefile.am
index 8bc2ff4..6499a99 100644
--- a/src/ui/mw/Makefile.am
+++ b/src/ui/mw/Makefile.am
@@ -8,21 +8,22 @@ AM_CXXFLAGS = \
noinst_LIBRARIES = liba.a
liba_a_SOURCES = \
- mw.hh \
- mw-widgets.hh \
- mw_cb.hh \
- mw.cc \
- mw_cb.cc \
+ mw-admit-one.cc \
mw-construct.cc \
- mw-splash.cc \
- mw-populate.cc \
+ mw-loadsave.cc \
+ mw-mainmenu_cb.cc \
mw-measurements.cc \
mw-measurements_cb.cc \
- mw-loadsave.cc \
- mw-admit-one.cc \
+ mw-populate.cc \
mw-settings_cb.cc \
mw-simulations.cc \
- mw-simulations_cb.cc
+ mw-simulations_cb.cc \
+ mw-splash.cc \
+ mw-widgets.hh \
+ mw.cc \
+ mw.hh \
+ mw_cb.cc \
+ mw_cb.hh
if DO_PCH
BUILT_SOURCES = \
diff --git a/src/ui/mw/mw-mainmenu_cb.cc b/src/ui/mw/mw-mainmenu_cb.cc
new file mode 100644
index 0000000..a6b3cf4
--- /dev/null
+++ b/src/ui/mw/mw-mainmenu_cb.cc
@@ -0,0 +1,367 @@
+// ;-*-C++-*-
+/*
+ * File name: ui/mw/mw-mainmenu_cb.cc
+ * Project: Aghermann
+ * Author: Andrei Zavada <[email protected]>
+ * Initial version: 2012-11-12
+ *
+ * Purpose: SExpDesignUI widget callbacks (main menu items)
+ *
+ * License: GPL
+ */
+
+#include "ui/misc.hh"
+#include "mw.hh"
+#include "mw_cb.hh"
+#include "ui/sm/sm.hh"
+#include "ui/sf/sf.hh"
+
+using namespace aghui;
+
+extern "C" {
+
+void
+iExpRefresh_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+ ED.do_rescan_tree( true);
+}
+
+void
+iExpPurgeComputed_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+ ED.do_purge_computed();
+}
+
+
+void
+iExpAnnotations_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+ gtk_dialog_run( ED.wGlobalAnnotations);
+}
+
+// annotations dialog
+
+void
+tvGlobalAnnotations_row_activated_cb( GtkTreeView* tree_view,
+ GtkTreePath* path,
+ GtkTreeViewColumn *column,
+ gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+ aghui::SExpDesignUI::SAnnotation *ann;
+ GtkTreeIter iter;
+ gtk_tree_model_get_iter( (GtkTreeModel*)ED.mGlobalAnnotations, &iter,
path);
+ gtk_tree_model_get( (GtkTreeModel*)ED.mGlobalAnnotations, &iter,
+ ED.mannotations_ref_col, &ann,
+ -1);
+ if ( ann == nullptr )
+ return;
+
+ gtk_widget_hide( (GtkWidget*)ED.wGlobalAnnotations);
+ aghui::SScoringFacility* found = nullptr;
+ for ( auto &F : ED.open_scoring_facilities )
+ if ( &F->csubject() == &ann->csubject
+ && F->session() == ann->session
+ && &F->sepisode() == &ann->sepisode ) {
+ found = F;
+ break;
+ }
+ if ( found ) {
+ auto pages = ann->page_span( found->vpagesize());
+ gtk_widget_show( (GtkWidget*)found->wScoringFacility);
+ found->set_cur_vpage( pages.a, true);
+ } else {
+ ED.using_subject = ED.subject_presentation_by_csubject(
ann->csubject);
+ auto SF = new aghui::SScoringFacility( ann->csubject,
ann->session, ann->sepisode.name(), ED);
+ auto pages = ann->page_span( SF->vpagesize());
+ SF->set_cur_vpage( pages.a, true);
+ }
+}
+
+
+
+
+
+void
+iExpBasicSADetectUltradianCycles_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+
+ aghui::SBusyBlock bb (ED.wMainWindow);
+
+ using namespace agh;
+ CExpDesign::TEpisodeFilterFun filter =
+ [&ED]( agh::CSubject::SEpisode& E) -> bool
+ {
+ return E.recordings.find( ED.AghH()) != E.recordings.end();
+ };
+ CExpDesign::TEpisodeOpFun F =
+ [&ED]( agh::CSubject::SEpisode& E)
+ {
+ ED.do_detect_ultradian_cycle( E.recordings.at( ED.AghH()));
+ };
+ CExpDesign::TEpisodeReportFun reporter =
+ [&ED]( const agh::CJGroup&, const agh::CSubject& J, const
string&, const agh::CSubject::SEpisode& E,
+ size_t i, size_t n)
+ {
+ snprintf_buf(
+ "(%zu of %zu) %s/%s/%s", i, n,
+ ED.ED->group_of(J), J.name(), E.name());
+ ED.buf_on_main_status_bar();
+ gtk_widget_queue_draw( (GtkWidget*)ED.cMeasurements);
+ gdk_window_process_updates(
+ gtk_widget_get_parent_window(
(GtkWidget*)ED.cMeasurements),
+ TRUE);
+ };
+
+ ED.ED->for_all_episodes( F, reporter, filter);
+}
+
+void
+iExpGloballyDetectArtifacts_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+
+ if ( ED.global_artifact_detection_profiles.size() < 1 ) {
+ pop_ok_message( ED.wMainWindow,
+ "Create some profiles first",
+ "You can do it by opening a recording in
Scoring Facility and"
+ " tweaking default parameters in Artifact
Detect dialog."
+ " After saving them as a profile, it will
appear here.");
+ return;
+ }
+
+ gtk_label_set_markup(
+ ED.lGlobalADHint,
+ (ED.global_artifact_detection_profiles.size() < 2)
+ ? "<small>You can create a custom profile in Scoring
Facility,\n"
+ "after tuning parameters on a real recording.</small>"
+ : ""); // good boy
+
+
+ auto response = gtk_dialog_run( ED.wGlobalArtifactDetection);
+ if ( response == GTK_RESPONSE_CANCEL ||
+ response == GTK_RESPONSE_DELETE_EVENT )
+ return; // just to save on indents in those lambdas below
+
+ auto& P = ED.global_artifact_detection_profiles[
+ gtk_combo_box_get_active_id(ED.eGlobalADProfiles)];
+ bool keep_existing = gtk_toggle_button_get_active(
(GtkToggleButton*)ED.eGlobalADKeepExisting);
+
+ SBusyBlock bb (ED.wMainWindow);
+
+ using namespace agh;
+ CExpDesign::TRecordingOpFun F;
+ CExpDesign::TRecordingFilterFun filter;
+ CExpDesign::TRecordingReportFun G =
+ [&]( const CJGroup&, const CSubject& J, const string& D, const
CSubject::SEpisode& E, const CRecording& R,
+ size_t i, size_t total)
+ {
+ snprintf_buf(
+ "(%zu of %zu) Detect artifacts in
%s/%s/%s/%s:%s", i, total,
+ ED.ED->group_of(J), J.name(), D.c_str(),
E.name(), R.F().channel_by_id(R.h()));
+ ED.buf_on_main_status_bar();
+ gtk_flush();
+ };
+ switch ( response ) {
+ case GTK_RESPONSE_OK:
+ F =
+ [&]( CRecording& R)
+ {
+ auto sr = R.F().samplerate(R.h());
+ auto& af = R.F().artifacts(R.h());
+
+ auto signal_original
+ = R.F().get_signal_original(R.h());
+
+ if ( not keep_existing )
+ af.clear_all();
+ auto marked
+ = metrics::mc::detect_artifacts(
signal_original, sr, P);
+ for ( size_t p = 0; p < marked.size(); ++p )
+ af.mark_artifact(
+ marked[p] * P.scope * sr,
+ (marked[p]+1) * P.scope * sr);
+ };
+ filter =
+ [&]( CRecording& R)
+ {
+ return R.signal_type() == sigfile::SChannel::TType::eeg;
+ };
+ break;
+ case 1: // "Clear All"
+ F =
+ [&]( CRecording& R)
+ {
+ auto& F = R.F();
+ for ( auto& H : R.F().channel_list() ) {
+ auto& af = F.artifacts(H.c_str());
+ af.clear_all();
+ }
+ };
+ filter =
+ [&]( CRecording&)
+ {
+ return true; // clear in all channels (mark in EEG
channels only)
+ };
+ break;
+ default:
+ throw runtime_error ("Fix AD dialog response?");
+ }
+
+ forward_list<aghui::SBusyBlock*> bbl;
+ for ( auto& SFp : ED.open_scoring_facilities )
+ bbl.push_front( new aghui::SBusyBlock (SFp->wScoringFacility));
+
+ ED.ED -> for_all_recordings( F, G, filter);
+
+ for ( auto& SF : ED.open_scoring_facilities ) {
+ for ( auto& H : SF->channels )
+ if ( H.type == sigfile::SChannel::TType::eeg )
+ H.get_signal_filtered();
+ SF->queue_redraw_all();
+ }
+
+ ED.populate_1();
+
+ for ( auto& bb : bbl )
+ delete bb;
+}
+
+void
+eGlobalADProfiles_changed_cb( GtkComboBox *b, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+
+ gtk_widget_set_sensitive(
+ (GtkWidget*)ED.bGlobalADOK,
+ ED.global_artifact_detection_profiles.size() > 0);
+}
+
+
+
+// iMontageSetDefaults_activate_cb( GtkMenuItem*, gpointer userdata)
+// {
+// auto& ED = *(SExpDesignUI*)userdata;
+
+// if ( GTK_RESPONSE_OK ==
+// gtk_dialog_run( ED.wMontageDefaults) )
+// FAFA;
+// }
+
+
+
+void
+iExpGloballySetFilters_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+
+ int LPO, HPO, NF;
+ double LPC, HPC;
+ aghui::SUIVarCollection W_V;
+ W_V.reg( ED.eGlobalFiltersLowPassCutoff, &LPC);
+ W_V.reg( ED.eGlobalFiltersLowPassOrder, &LPO);
+ W_V.reg( ED.eGlobalFiltersHighPassCutoff, &HPC);
+ W_V.reg( ED.eGlobalFiltersHighPassOrder, &HPO);
+ W_V.reg( ED.eGlobalFiltersNotchFilter, &NF);
+
+ if ( GTK_RESPONSE_OK ==
+ gtk_dialog_run( ED.wGlobalFilters) ) {
+ forward_list<aghui::SBusyBlock*> bbl;
+ for ( auto& SFp : ED.open_scoring_facilities )
+ bbl.push_front( new aghui::SBusyBlock
(SFp->wScoringFacility));
+ W_V.down();
+ for ( auto &G : ED.ED->groups )
+ for ( auto &J : G.second )
+ for ( auto &D : J.measurements )
+ for ( auto &E : D.second.episodes )
+ for ( auto &F : E.sources )
+ for ( auto &H :
F.channel_list() ) {
+ auto& ff =
F.filters(H.c_str());
+
ff.low_pass_cutoff = LPC;
+
ff.low_pass_order = LPO;
+
ff.high_pass_cutoff = HPC;
+
ff.high_pass_order = HPO;
+ ff.notch_filter
= (sigfile::SFilterPack::TNotchFilter)NF;
+ }
+ ED.ED->sync();
+
+ for ( auto& SF : ED.open_scoring_facilities ) {
+ for ( auto& H : SF->channels )
+ if ( H.type == sigfile::SChannel::TType::eeg )
+ H.get_signal_filtered();
+ SF->queue_redraw_all();
+ }
+ ED.populate_1();
+ for ( auto& bb : bbl )
+ delete bb;
+ }
+}
+
+void
+bGlobalMontageResetAll_clicked_cb( GtkButton*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+
+ snprintf_buf( "find '%s' -name '.*.montage' -delete",
+ ED.ED->session_dir().c_str());
+ if ( system( __buf__) )
+ pop_ok_message( ED.wMainWindow, "Command '%s' returned a
non-zero status. This is weird.", __buf__);
+}
+
+
+
+void
+iHelpAbout_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+ gtk_widget_show_all( (GtkWidget*)ED.wAbout);
+}
+
+void
+iHelpUsage_activate_cb( GtkMenuItem*, gpointer)
+{
+// auto& ED = *(SExpDesignUI*)userdata;
+ gtk_show_uri( NULL,
+ "http://johnhommer.com/academic/code/aghermann/usage/";,
+ GDK_CURRENT_TIME, NULL);
+}
+
+
+inline namespace {
+
+void
+before_ED_close( SExpDesignUI& ED)
+{
+ gtk_window_get_position( ED.wMainWindow, &ED.geometry.x,
&ED.geometry.y);
+ gtk_window_get_size( ED.wMainWindow, &ED.geometry.w, &ED.geometry.h);
+}
+
+} // inline namespace
+
+void
+iExpClose_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+
+ before_ED_close( ED);
+ g_signal_emit_by_name( ED._p->bSessionChooserClose, "clicked");
+}
+
+void
+iExpQuit_activate_cb( GtkMenuItem*, gpointer userdata)
+{
+ auto& ED = *(SExpDesignUI*)userdata;
+
+ before_ED_close( ED);
+ g_signal_emit_by_name( ED._p->bSessionChooserQuit, "clicked");
+}
+
+
+
+} // extern "C"
+
+// eof
diff --git a/src/ui/mw/mw_cb.cc b/src/ui/mw/mw_cb.cc
index 57a2b62..92c0b98 100644
--- a/src/ui/mw/mw_cb.cc
+++ b/src/ui/mw/mw_cb.cc
@@ -1,6 +1,6 @@
// ;-*-C++-*-
/*
- * File name: ui/mw_cb.cc
+ * File name: ui/mw/mw_cb.cc
* Project: Aghermann
* Author: Andrei Zavada <[email protected]>
* Initial version: 2011-06-29
@@ -11,7 +11,6 @@
*/
#include "ui/misc.hh"
-#include "ui/sm/sm.hh"
#include "ui/sf/sf.hh"
#include "mw.hh"
#include "mw_cb.hh"
@@ -76,310 +75,6 @@ tTaskSelector_switch_page_cb( GtkNotebook*, gpointer, guint
page_num, gpointer u
-void
-iExpRefresh_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
- ED.do_rescan_tree( true);
-}
-
-void
-iExpPurgeComputed_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
- ED.do_purge_computed();
-}
-
-
-
-
-void
-iExpAnnotations_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
- gtk_dialog_run( ED.wGlobalAnnotations);
-}
-
-
-void
-iExpBasicSADetectUltradianCycles_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
-
- aghui::SBusyBlock bb (ED.wMainWindow);
-
- using namespace agh;
- CExpDesign::TEpisodeFilterFun filter =
- [&ED]( agh::CSubject::SEpisode& E) -> bool
- {
- return E.recordings.find( ED.AghH()) != E.recordings.end();
- };
- CExpDesign::TEpisodeOpFun F =
- [&ED]( agh::CSubject::SEpisode& E)
- {
- ED.do_detect_ultradian_cycle( E.recordings.at( ED.AghH()));
- };
- CExpDesign::TEpisodeReportFun reporter =
- [&ED]( const agh::CJGroup&, const agh::CSubject& J, const
string&, const agh::CSubject::SEpisode& E,
- size_t i, size_t n)
- {
- snprintf_buf(
- "(%zu of %zu) %s/%s/%s", i, n,
- ED.ED->group_of(J), J.name(), E.name());
- ED.buf_on_main_status_bar();
- gtk_widget_queue_draw( (GtkWidget*)ED.cMeasurements);
- gdk_window_process_updates(
- gtk_widget_get_parent_window(
(GtkWidget*)ED.cMeasurements),
- TRUE);
- };
-
- ED.ED->for_all_episodes( F, reporter, filter);
-}
-
-void
-iExpGloballyDetectArtifacts_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
-
- if ( ED.global_artifact_detection_profiles.size() < 1 ) {
- pop_ok_message( ED.wMainWindow,
- "Create some profiles first",
- "You can do it by opening a recording in
Scoring Facility and"
- " tweaking default parameters in Artifact
Detect dialog."
- " After saving them as a profile, it will
appear here.");
- return;
- }
-
- gtk_label_set_markup(
- ED.lGlobalADHint,
- (ED.global_artifact_detection_profiles.size() < 2)
- ? "<small>You can create a custom profile in Scoring
Facility,\n"
- "after tuning parameters on a real recording.</small>"
- : ""); // good boy
-
-
- auto response = gtk_dialog_run( ED.wGlobalArtifactDetection);
- if ( response == GTK_RESPONSE_CANCEL ||
- response == GTK_RESPONSE_DELETE_EVENT )
- return; // just to save on indents in those lambdas below
-
- auto& P = ED.global_artifact_detection_profiles[
- gtk_combo_box_get_active_id(ED.eGlobalADProfiles)];
- bool keep_existing = gtk_toggle_button_get_active(
(GtkToggleButton*)ED.eGlobalADKeepExisting);
-
- SBusyBlock bb (ED.wMainWindow);
-
- using namespace agh;
- CExpDesign::TRecordingOpFun F;
- CExpDesign::TRecordingFilterFun filter;
- CExpDesign::TRecordingReportFun G =
- [&]( const CJGroup&, const CSubject& J, const string& D, const
CSubject::SEpisode& E, const CRecording& R,
- size_t i, size_t total)
- {
- snprintf_buf(
- "(%zu of %zu) Detect artifacts in
%s/%s/%s/%s:%s", i, total,
- ED.ED->group_of(J), J.name(), D.c_str(),
E.name(), R.F().channel_by_id(R.h()));
- ED.buf_on_main_status_bar();
- gtk_flush();
- };
- switch ( response ) {
- case GTK_RESPONSE_OK:
- F =
- [&]( CRecording& R)
- {
- auto sr = R.F().samplerate(R.h());
- auto& af = R.F().artifacts(R.h());
-
- auto signal_original
- = R.F().get_signal_original(R.h());
-
- if ( not keep_existing )
- af.clear_all();
- auto marked
- = metrics::mc::detect_artifacts(
signal_original, sr, P);
- for ( size_t p = 0; p < marked.size(); ++p )
- af.mark_artifact(
- marked[p] * P.scope * sr,
- (marked[p]+1) * P.scope * sr);
- };
- filter =
- [&]( CRecording& R)
- {
- return R.signal_type() == sigfile::SChannel::TType::eeg;
- };
- break;
- case 1: // "Clear All"
- F =
- [&]( CRecording& R)
- {
- auto& F = R.F();
- for ( auto& H : R.F().channel_list() ) {
- auto& af = F.artifacts(H.c_str());
- af.clear_all();
- }
- };
- filter =
- [&]( CRecording&)
- {
- return true; // clear in all channels (mark in EEG
channels only)
- };
- break;
- default:
- throw runtime_error ("Fix AD dialog response?");
- }
-
- forward_list<aghui::SBusyBlock*> bbl;
- for ( auto& SFp : ED.open_scoring_facilities )
- bbl.push_front( new aghui::SBusyBlock (SFp->wScoringFacility));
-
- ED.ED -> for_all_recordings( F, G, filter);
-
- for ( auto& SF : ED.open_scoring_facilities ) {
- for ( auto& H : SF->channels )
- if ( H.type == sigfile::SChannel::TType::eeg )
- H.get_signal_filtered();
- SF->queue_redraw_all();
- }
-
- ED.populate_1();
-
- for ( auto& bb : bbl )
- delete bb;
-}
-
-void
-eGlobalADProfiles_changed_cb( GtkComboBox *b, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
-
- gtk_widget_set_sensitive(
- (GtkWidget*)ED.bGlobalADOK,
- ED.global_artifact_detection_profiles.size() > 0);
-}
-
-
-
-// iMontageSetDefaults_activate_cb( GtkMenuItem*, gpointer userdata)
-// {
-// auto& ED = *(SExpDesignUI*)userdata;
-
-// if ( GTK_RESPONSE_OK ==
-// gtk_dialog_run( ED.wMontageDefaults) )
-// FAFA;
-// }
-
-
-
-void
-iExpGloballySetFilters_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
-
- int LPO, HPO, NF;
- double LPC, HPC;
- aghui::SUIVarCollection W_V;
- W_V.reg( ED.eGlobalFiltersLowPassCutoff, &LPC);
- W_V.reg( ED.eGlobalFiltersLowPassOrder, &LPO);
- W_V.reg( ED.eGlobalFiltersHighPassCutoff, &HPC);
- W_V.reg( ED.eGlobalFiltersHighPassOrder, &HPO);
- W_V.reg( ED.eGlobalFiltersNotchFilter, &NF);
-
- if ( GTK_RESPONSE_OK ==
- gtk_dialog_run( ED.wGlobalFilters) ) {
- forward_list<aghui::SBusyBlock*> bbl;
- for ( auto& SFp : ED.open_scoring_facilities )
- bbl.push_front( new aghui::SBusyBlock
(SFp->wScoringFacility));
- W_V.down();
- for ( auto &G : ED.ED->groups )
- for ( auto &J : G.second )
- for ( auto &D : J.measurements )
- for ( auto &E : D.second.episodes )
- for ( auto &F : E.sources )
- for ( auto &H :
F.channel_list() ) {
- auto& ff =
F.filters(H.c_str());
-
ff.low_pass_cutoff = LPC;
-
ff.low_pass_order = LPO;
-
ff.high_pass_cutoff = HPC;
-
ff.high_pass_order = HPO;
- ff.notch_filter
= (sigfile::SFilterPack::TNotchFilter)NF;
- }
- ED.ED->sync();
-
- for ( auto& SF : ED.open_scoring_facilities ) {
- for ( auto& H : SF->channels )
- if ( H.type == sigfile::SChannel::TType::eeg )
- H.get_signal_filtered();
- SF->queue_redraw_all();
- }
- ED.populate_1();
- for ( auto& bb : bbl )
- delete bb;
- }
-}
-
-void
-bGlobalMontageResetAll_clicked_cb( GtkButton*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
-
- snprintf_buf( "find '%s' -name '.*.montage' -delete",
- ED.ED->session_dir().c_str());
- if ( system( __buf__) )
- pop_ok_message( ED.wMainWindow, "Command '%s' returned a
non-zero status. This is weird.", __buf__);
-}
-
-
-
-void
-iHelpAbout_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
- gtk_widget_show_all( (GtkWidget*)ED.wAbout);
-}
-
-void
-iHelpUsage_activate_cb( GtkMenuItem*, gpointer)
-{
-// auto& ED = *(SExpDesignUI*)userdata;
- gtk_show_uri( NULL,
- "http://johnhommer.com/academic/code/aghermann/usage/";,
- GDK_CURRENT_TIME, NULL);
-}
-
-
-inline namespace {
-
-void
-before_ED_close( SExpDesignUI& ED)
-{
- gtk_window_get_position( ED.wMainWindow, &ED.geometry.x,
&ED.geometry.y);
- gtk_window_get_size( ED.wMainWindow, &ED.geometry.w, &ED.geometry.h);
-}
-
-} // inline namespace
-
-void
-iExpClose_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
-
- before_ED_close( ED);
- g_signal_emit_by_name( ED._p->bSessionChooserClose, "clicked");
-}
-
-void
-iExpQuit_activate_cb( GtkMenuItem*, gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
-
- before_ED_close( ED);
- g_signal_emit_by_name( ED._p->bSessionChooserQuit, "clicked");
-}
-
-
-
-
-
// other main toolbar controls
void
@@ -533,46 +228,6 @@ eMsmtChannel_changed_cb( GtkComboBox *combobox, gpointer
userdata)
-// annotations dialog
-
-void
-tvGlobalAnnotations_row_activated_cb( GtkTreeView* tree_view,
- GtkTreePath* path,
- GtkTreeViewColumn *column,
- gpointer userdata)
-{
- auto& ED = *(SExpDesignUI*)userdata;
- aghui::SExpDesignUI::SAnnotation *ann;
- GtkTreeIter iter;
- gtk_tree_model_get_iter( (GtkTreeModel*)ED.mGlobalAnnotations, &iter,
path);
- gtk_tree_model_get( (GtkTreeModel*)ED.mGlobalAnnotations, &iter,
- ED.mannotations_ref_col, &ann,
- -1);
- if ( ann == nullptr )
- return;
-
- gtk_widget_hide( (GtkWidget*)ED.wGlobalAnnotations);
- aghui::SScoringFacility* found = nullptr;
- for ( auto &F : ED.open_scoring_facilities )
- if ( &F->csubject() == &ann->csubject
- && F->session() == ann->session
- && &F->sepisode() == &ann->sepisode ) {
- found = F;
- break;
- }
- if ( found ) {
- auto pages = ann->page_span( found->vpagesize());
- gtk_widget_show( (GtkWidget*)found->wScoringFacility);
- found->set_cur_vpage( pages.a, true);
- } else {
- ED.using_subject = ED.subject_presentation_by_csubject(
ann->csubject);
- auto SF = new aghui::SScoringFacility( ann->csubject,
ann->session, ann->sepisode.name(), ED);
- auto pages = ann->page_span( SF->vpagesize());
- SF->set_cur_vpage( pages.a, true);
- }
-}
-
-
void
diff --git a/src/ui/sf/Makefile.am b/src/ui/sf/Makefile.am
index 004eca7..ee307b2 100644
--- a/src/ui/sf/Makefile.am
+++ b/src/ui/sf/Makefile.am
@@ -8,27 +8,27 @@ AM_CXXFLAGS := \
noinst_LIBRARIES := liba.a
liba_a_SOURCES := \
- sf.hh \
- sf-widgets.hh \
- sf_cb.hh \
- sf.cc \
- sf-construct.cc \
- sf-channel.cc \
sf-artifacts.cc \
sf-artifacts_cb.cc \
+ sf-channel.cc \
+ sf-construct.cc \
+ sf-filter.cc \
+ sf-filter_cb.cc \
+ sf-hypnogram.cc \
+ sf-hypnogram_cb.cc \
sf-ica.cc \
sf-ica_cb.cc \
- sf_cb.cc \
sf-montage.cc \
sf-montage_cb.cc \
- sf-hypnogram.cc \
- sf-hypnogram_cb.cc \
sf-patterns.cc \
sf-patterns_cb.cc \
- sf-filter.cc \
- sf-filter_cb.cc \
sf-phasediff.cc \
- sf-phasediff_cb.cc
+ sf-phasediff_cb.cc \
+ sf-widgets.hh \
+ sf.cc \
+ sf.hh \
+ sf_cb.cc \
+ sf_cb.hh
if DO_PCH
BUILT_SOURCES = \
diff --git a/src/ui/sm/Makefile.am b/src/ui/sm/Makefile.am
index b5bcb62..2371aab 100644
--- a/src/ui/sm/Makefile.am
+++ b/src/ui/sm/Makefile.am
@@ -8,8 +8,8 @@ AM_CXXFLAGS := \
noinst_LIBRARIES := liba.a
liba_a_SOURCES := \
- sm.cc \
sm-construct.cc \
+ sm.cc \
sm.hh \
sm_cb.cc \
sm_cb.hh
--
Sleep experiment manager
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