Author: osallou-guest Date: 2012-12-05 08:48:48 +0000 (Wed, 05 Dec 2012) New Revision: 12587
Added: trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping Modified: trunk/packages/biojava3/trunk/debian/changelog trunk/packages/biojava3/trunk/debian/patches/series Log: fix character mapping issue in pbuilder Modified: trunk/packages/biojava3/trunk/debian/changelog =================================================================== --- trunk/packages/biojava3/trunk/debian/changelog 2012-12-04 19:02:34 UTC (rev 12586) +++ trunk/packages/biojava3/trunk/debian/changelog 2012-12-05 08:48:48 UTC (rev 12587) @@ -1,10 +1,8 @@ -biojava3-live (3.0.5-1) UNRELEASED; urgency=low +biojava3-live (3.0.5-1) unstable; urgency=low * New upstream release * Use forester 1.005 - # Waiting for source availability of Forester in biojava3 download site. - -- Olivier Sallou <[email protected]> Sun, 02 Dec 2012 22:35:09 +0100 biojava3-live (3.0.4-2) unstable; urgency=low Added: trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping =================================================================== --- trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping (rev 0) +++ trunk/packages/biojava3/trunk/debian/patches/fix_ascii_characters_mapping 2012-12-05 08:48:48 UTC (rev 12587) @@ -0,0 +1,17 @@ +Subject: ASCII error in pbuilder +Description: unmappable character for encoding ASCII +Author: Olivier Sallou <[email protected]> +Last-Updated: 2012-12-05 +Forwarded: yes +Bug: http://code.google.com/p/forester/issues/detail?id=1 +--- a/biojava3-forester/src/main/java/org/forester/test/Test.java ++++ b/biojava3-forester/src/main/java/org/forester/test/Test.java +@@ -1310,7 +1310,7 @@ + return false; + } + if ( !( t3_rt.getNode( "root node" ).getNodeData().getReference().getDescription() +- .equals( "Aguinaldo, A. M. A.; J. M. Turbeville, L. S. Linford, M. C. Rivera, J. R. Garey, R. A. Raff, & J. A. Lake (1997). \"Evidence for a clade of nematodes, arthropods and other moulting animals\". Nature 387 (6632): 489–493." ) ) ) { ++ .equals( "Aguinaldo, A. M. A.; J. M. Turbeville, L. S. Linford, M. C. Rivera, J. R. Garey, R. A. Raff, & J. A. Lake (1997). \"Evidence for a clade of nematodes, arthropods and other moulting animals\". Nature 387 (6632): 489-493." ) ) ) { + return false; + } + if ( !t3_rt.getNode( "root node" ).getNodeData().getTaxonomy().getTaxonomyCode().equals( "ECDYS" ) ) { Modified: trunk/packages/biojava3/trunk/debian/patches/series =================================================================== --- trunk/packages/biojava3/trunk/debian/patches/series 2012-12-04 19:02:34 UTC (rev 12586) +++ trunk/packages/biojava3/trunk/debian/patches/series 2012-12-05 08:48:48 UTC (rev 12587) @@ -1,2 +1,3 @@ use_simple_json fix_code_to_support_latest_jmol +fix_ascii_characters_mapping _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
