Author: christophgil-guest Date: 2013-01-13 11:28:16 +0000 (Sun, 13 Jan 2013) New Revision: 12769
Modified: trunk/packages/strap/trunk/debian/bin/strap_protein_alignment trunk/packages/strap/trunk/debian/changelog trunk/packages/strap/trunk/debian/control trunk/packages/strap/trunk/debian/strap.desktop trunk/packages/strap/trunk/debian/strap_protein_alignment.1 Log: Added support for bash tabulator completion. Improved description. Modified: trunk/packages/strap/trunk/debian/bin/strap_protein_alignment =================================================================== --- trunk/packages/strap/trunk/debian/bin/strap_protein_alignment 2013-01-10 21:50:31 UTC (rev 12768) +++ trunk/packages/strap/trunk/debian/bin/strap_protein_alignment 2013-01-13 11:28:16 UTC (rev 12769) @@ -5,6 +5,7 @@ -/bin/sh /usr/bin/strap_base -probeWebProxy -stdout "$@" +/bin/sh /usr/bin/strap_base -probeWebProxy -stdout -debianStrapBase=false "$@" + \ No newline at end of file Modified: trunk/packages/strap/trunk/debian/changelog =================================================================== --- trunk/packages/strap/trunk/debian/changelog 2013-01-10 21:50:31 UTC (rev 12768) +++ trunk/packages/strap/trunk/debian/changelog 2013-01-13 11:28:16 UTC (rev 12769) @@ -1,4 +1,4 @@ -strap (1-1) UNRELEASED; urgency=low +strap (1) UNRELEASED; urgency=low * Initial release (Closes: #675202) Modified: trunk/packages/strap/trunk/debian/control =================================================================== --- trunk/packages/strap/trunk/debian/control 2013-01-10 21:50:31 UTC (rev 12768) +++ trunk/packages/strap/trunk/debian/control 2013-01-13 11:28:16 UTC (rev 12769) @@ -3,8 +3,8 @@ Priority: extra Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Christoph Gille <[email protected]> -Build-Depends: strap-base, texlive-latex-extra -Standards-Version: 3.9.3 +Build-Depends: debhelper (>= 8), strap-base, texlive-latex-extra +Standards-Version: 3.9.1 Homepage: http://3d-alignment.eu/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/strap/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/strap/trunk/ @@ -15,20 +15,19 @@ Recommends: muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align, chemical-mime-data Suggests: Enhances: clustalw, tm-align, pymol, mustang, muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align -Description: Interactive alignment editor - aligning proteins by sequence and structure. - Strap can be used to display, edit and compute multiple sequence - alignments, structure alignments and 3D-structure superpositions. It - aids structure / function prediction and database searching. Modern - Bioinformatics tools can be used in an intuitive graphical user - interface which features drag'n drop, context menus multiple item - selection and tab-key word completion. The sequence alignment view - and the 3D-visualization (Pymol, JMol) are tightly linked. - Information can be attached to residue selections such as free text - notes, cross-references as well as 3D and 1D display style commands. - The alignment can be exported in several formats: Multiple-Fasta, - ClustalW, MSF, HSSP, Jalview. Decorated alignments with residue - annotations can be exported to PDF and HTML and can be edited with - MS-Word or gwrite to create figures in publication quality - see - http://3d-alignment.eu/ for details. Strap is scriptable and can be - used by other programs to display sequence alignments and - 3D-superpositions. \ No newline at end of file +Description: Comfortable and intuitive protein alignment editor / viewer. + Strap is started from the menu "Science" in the "Applications" menu + or with the shell command strap_protein_alignment. Alignments can be + manually edited or computed automatically using sequence and/or + structure based methods. Information can be attached to proteins and + residue selections such as free text notes, balloon messages, + cross-references as well as 3D and PDF display styles. Alignments + can be exported in several formats: Multiple-Fasta, ClustalW, MSF, + HSSP, Jalview. Decorated alignments with residue annotations and + secondary structure cartoons can be exported to PDF, HTML and + Word-processors to create figures in publication quality - see + http://3d-alignment.eu/ for details. Strap is an integrated + environment for modern Bioinformatics tools like DAS sequence + features, 3D-visualization, structure prediction and Blast search. It + is scriptable and extendable and can be used by other programs to + display sequence alignments and 3D-superpositions. \ No newline at end of file Modified: trunk/packages/strap/trunk/debian/strap.desktop =================================================================== --- trunk/packages/strap/trunk/debian/strap.desktop 2013-01-10 21:50:31 UTC (rev 12768) +++ trunk/packages/strap/trunk/debian/strap.desktop 2013-01-13 11:28:16 UTC (rev 12769) @@ -1,7 +1,7 @@ [Desktop Entry] Version=1.0 Name=Strap protein alignments -Exec=/usr/bin/strap_protein_alignment +Exec=/usr/bin/strap_protein_alignment -stdout=false Terminal=false Icon=strap Type=Application Modified: trunk/packages/strap/trunk/debian/strap_protein_alignment.1 =================================================================== --- trunk/packages/strap/trunk/debian/strap_protein_alignment.1 2013-01-10 21:50:31 UTC (rev 12768) +++ trunk/packages/strap/trunk/debian/strap_protein_alignment.1 2013-01-13 11:28:16 UTC (rev 12769) @@ -374,5 +374,4 @@ .BR seaview (1) .BR boxshade (1) .BR pymol (1) -.BR openastex (1) -.BR strap-text-viewer (1) + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
