Author: alteholz Date: 2013-02-17 17:53:13 +0000 (Sun, 17 Feb 2013) New Revision: 13025
Added: trunk/packages/autodocksuite/trunk/debian/patches/make.patch trunk/packages/autodocksuite/trunk/debian/patches/series trunk/packages/autodocksuite/trunk/debian/source/ trunk/packages/autodocksuite/trunk/debian/source/format Modified: trunk/packages/autodocksuite/trunk/debian/changelog trunk/packages/autodocksuite/trunk/debian/control trunk/packages/autodocksuite/trunk/debian/rules trunk/packages/autodocksuite/trunk/debian/watch Log: at least it is building again; some work needed Modified: trunk/packages/autodocksuite/trunk/debian/changelog =================================================================== --- trunk/packages/autodocksuite/trunk/debian/changelog 2013-02-17 11:43:24 UTC (rev 13024) +++ trunk/packages/autodocksuite/trunk/debian/changelog 2013-02-17 17:53:13 UTC (rev 13025) @@ -1,3 +1,9 @@ +autodocksuite (4.2.5.1-1) UNRELEASED; urgency=low + + * new upstream version + + -- Thorsten Alteholz <[email protected]> Sat, 16 Feb 2013 20:42:51 +0100 + autodocksuite (4.2.3-3) UNRELEASED; urgency=low [ Charles Plessy ] Modified: trunk/packages/autodocksuite/trunk/debian/control =================================================================== --- trunk/packages/autodocksuite/trunk/debian/control 2013-02-17 11:43:24 UTC (rev 13024) +++ trunk/packages/autodocksuite/trunk/debian/control 2013-02-17 17:53:13 UTC (rev 13025) @@ -3,10 +3,12 @@ Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Steffen Moeller <[email protected]>, - Charles Plessy <[email protected]>, Nelson A. de Oliveira <[email protected]>, - Andreas Tille <[email protected]> + Charles Plessy <[email protected]>, + Nelson A. de Oliveira <[email protected]>, + Andreas Tille <[email protected]>, + Thorsten Alteholz <[email protected]> Build-Depends: debhelper (>= 7), automake, csh -Standards-Version: 3.9.2 +Standards-Version: 3.9.3 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/autodocksuite/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/autodocksuite/trunk/ Homepage: http://autodock.scripps.edu/ Added: trunk/packages/autodocksuite/trunk/debian/patches/make.patch =================================================================== --- trunk/packages/autodocksuite/trunk/debian/patches/make.patch (rev 0) +++ trunk/packages/autodocksuite/trunk/debian/patches/make.patch 2013-02-17 17:53:13 UTC (rev 13025) @@ -0,0 +1,14 @@ +Index: src/autogrid/Makefile.am +=================================================================== +--- src.orig/autogrid/Makefile.am 2013-02-17 18:47:22.000000000 +0100 ++++ src/autogrid/Makefile.am 2013-02-17 18:48:18.000000000 +0100 +@@ -155,7 +155,8 @@ + default_parameters.h : $(srcdir)/../autodock/paramdat2h.csh $(srcdir)/../autodock/AD4_parameters.dat $(srcdir)/../autodock/AD4.1_bound.dat + rm -f $@ + csh $(srcdir)/../autodock/paramdat2h.csh $(srcdir)/../autodock/AD4_parameters.dat $(srcdir)/../autodock/AD4.1_bound.dat > $@ +- sh ../copyfilesfromAD -b # copying from build dir , not source dir ++# sh ./copyfilesfromAD -b # copying from build dir , not source dir ++ sh ./copyfilesfromAD # copying from src dir , not build dir + + # 2007-04-30 MP & GMM: this line is necessary to be able to compile read_parameter_library.o + read_parameter_library.o : default_parameters.h Added: trunk/packages/autodocksuite/trunk/debian/patches/series =================================================================== --- trunk/packages/autodocksuite/trunk/debian/patches/series (rev 0) +++ trunk/packages/autodocksuite/trunk/debian/patches/series 2013-02-17 17:53:13 UTC (rev 13025) @@ -0,0 +1 @@ +make.patch Modified: trunk/packages/autodocksuite/trunk/debian/rules =================================================================== --- trunk/packages/autodocksuite/trunk/debian/rules 2013-02-17 11:43:24 UTC (rev 13024) +++ trunk/packages/autodocksuite/trunk/debian/rules 2013-02-17 17:53:13 UTC (rev 13025) @@ -6,10 +6,10 @@ SHELL := /bin/bash -#CXX=g++ -#CC=gcc -CXX=/usr/lib/gcc-snapshot/bin/g++ -CC=/usr/lib/gcc-snapshot/bin/gcc +CXX=g++ +CC=gcc +#CXX=/usr/lib/gcc-snapshot/bin/g++ +#CC=/usr/lib/gcc-snapshot/bin/gcc # see http://www.gentoo.org/proj/en/qa/asneeded.xml LDFLAGS="-Wl,--as-needed" @@ -37,7 +37,7 @@ configure-stamp: $(QUILT_STAMPFN) dh_testdir set -e; \ - for d in autogrid autodock; do \ + for d in autodock autogrid; do \ ( cd $$d && autoreconf -i && ./configure CC="$(CC)" CXX="$(CXX)" LDFLAGS="$(LDFLAGS)" CFLAGS="$(CFLAGS)" CXXFLAGS="$(CXXFLAGS)" --prefix=/usr ) \ done @@ -48,7 +48,12 @@ build-arch: build-arch-stamp build-arch-stamp: configure-stamp set -e; \ - for d in autogrid autodock; do $(MAKE) -C $$d; done + pwd; \ + find; \ + for d in autodock autogrid; do $(MAKE) -C $$d; done +# for d in autogrid autodock; do \ +# ( cd $$d && $(MAKE)) \ +# done touch $@ build-indep: build-indep-stamp @@ -117,3 +122,8 @@ binary: binary-arch binary-indep .PHONY: build clean binary-indep binary-arch binary install install-indep install-arch configure + +get-orig-source: + mkdir -p ../tarballs + uscan --verbose --force-download --destdir=../tarballs + Added: trunk/packages/autodocksuite/trunk/debian/source/format =================================================================== --- trunk/packages/autodocksuite/trunk/debian/source/format (rev 0) +++ trunk/packages/autodocksuite/trunk/debian/source/format 2013-02-17 17:53:13 UTC (rev 13025) @@ -0,0 +1 @@ +3.0 (quilt) Modified: trunk/packages/autodocksuite/trunk/debian/watch =================================================================== --- trunk/packages/autodocksuite/trunk/debian/watch 2013-02-17 11:43:24 UTC (rev 13024) +++ trunk/packages/autodocksuite/trunk/debian/watch 2013-02-17 17:53:13 UTC (rev 13025) @@ -1,6 +1,4 @@ version=3 ## rc (release candidates) have to be lower than the final version -#opts="dversionmangle=s/\+rc/~rc/" \ -#http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/ \.\./autodock-registration/tars/.*/autodocksuite-(.*)-src\.tar\.gz -# Please help with the watch file -http://autodock.scripps.edu/downloads/autodock-registration/tars/dist423/autodocksuite-(4.2.3)-src.tar.gz +opts="dversionmangle=s/\+rc/~rc/" \ +http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/ tars/.*/autodocksuite-(.*)-src\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
