Author: sascha-guest Date: 2013-02-24 16:04:15 +0000 (Sun, 24 Feb 2013) New Revision: 13100
Modified: trunk/packages/aragorn/trunk/debian/man/aragorn.1 trunk/packages/aragorn/trunk/debian/manpage.1.src Log: minor manpage changes Modified: trunk/packages/aragorn/trunk/debian/man/aragorn.1 =================================================================== --- trunk/packages/aragorn/trunk/debian/man/aragorn.1 2013-02-24 15:52:18 UTC (rev 13099) +++ trunk/packages/aragorn/trunk/debian/man/aragorn.1 2013-02-24 16:04:15 UTC (rev 13100) @@ -2,12 +2,12 @@ .\" Title: aragorn .\" Author: [see the "AUTHORS" section] .\" Generator: DocBook XSL Stylesheets v1.76.1 <http://docbook.sf.net/> -.\" Date: 02/23/2013 +.\" Date: 02/24/2013 .\" Manual: \ \& .\" Source: \ \& .\" Language: English .\" -.TH "ARAGORN" "1" "02/23/2013" "\ \&" "\ \&" +.TH "ARAGORN" "1" "02/24/2013" "\ \&" "\ \&" .\" ----------------------------------------------------------------- .\" * Define some portability stuff .\" ----------------------------------------------------------------- @@ -50,7 +50,10 @@ .PP \fB\-mt\fR .RS 4 -Search for Metazoan mitochondrial tRNA genes\&. tRNA genes with introns not detected\&. \-i,\-sr switchs ignored\&. Composite Metazoan mitochondrial genetic code used\&. +Search for Metazoan mitochondrial tRNA genes\&. tRNA genes with introns not detected\&. +\fB\-i\fR, +\fB\-sr\fR +switchs ignored\&. Composite Metazoan mitochondrial genetic code used\&. .RE .PP \fB\-mtmam\fR @@ -78,7 +81,8 @@ \fB\-gc\fR[\fInum\fR] .RS 4 Use the GenBank transl_table = [\fInum\fR] genetic code\&. Individual modifications can be appended using -\fI,BBB\fR=<aa> B = A,C,G, or T\&. <aa> is the three letter code for an amino\-acid\&. More than one modification can be specified\&. eg \-gcvert,aga=Trp,agg=Trp uses the Vertebrate Mitochondrial code and the codons AGA and AGG changed to Tryptophan\&. +\fI,BBB\fR=<aa> B = A,C,G, or T\&. <aa> is the three letter code for an amino\-acid\&. More than one modification can be specified\&. eg +\fB\-gcvert\fR,aga=Trp,agg=Trp uses the Vertebrate Mitochondrial code and the codons AGA and AGG changed to Tryptophan\&. .RE .PP \fB\-gcstd\fR Modified: trunk/packages/aragorn/trunk/debian/manpage.1.src =================================================================== --- trunk/packages/aragorn/trunk/debian/manpage.1.src 2013-02-24 15:52:18 UTC (rev 13099) +++ trunk/packages/aragorn/trunk/debian/manpage.1.src 2013-02-24 16:04:15 UTC (rev 13100) @@ -26,7 +26,7 @@ is not detected unless specified as well. *-mt*:: Search for Metazoan mitochondrial tRNA genes. - tRNA genes with introns not detected. -i,-sr switchs + tRNA genes with introns not detected. *-i*, *-sr* switchs ignored. Composite Metazoan mitochondrial genetic code used. @@ -48,7 +48,7 @@ Individual modifications can be appended using ',BBB'=<aa> B = A,C,G, or T. <aa> is the three letter code for an amino-acid. More than one modification - can be specified. eg -gcvert,aga=Trp,agg=Trp uses + can be specified. eg *-gcvert*,aga=Trp,agg=Trp uses the Vertebrate Mitochondrial code and the codons AGA and AGG changed to Tryptophan. _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
