The following commit has been merged in the master branch:
commit c330e89b417681cd118a0368cc4fcb647b9c3e61
Author: Charles Plessy <[email protected]>
Date: Thu Mar 7 14:38:21 2013 +0900
Updated list of BWA's commands.
diff --git a/debian/bash_completion/bwa b/debian/bash_completion/bwa
index bc011bf..282dab1 100644
--- a/debian/bash_completion/bwa
+++ b/debian/bash_completion/bwa
@@ -5,10 +5,9 @@ _bwa()
cur="${COMP_WORDS[COMP_CWORD]}"
prev="${COMP_WORDS[COMP_CWORD-1]}"
opts="index aln samse sampe
- bwasw fa2pac pac2bwt
+ bwasw fastmap mem fa2pac pac2bwt
pac2bwtgen bwtupdate
- pac_rev bwt2sa pac2cspac
- stdsw"
+ bwt2sa"
case $prev in
bwa)
--
Burrows-Wheeler Aligner
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