The following commit has been merged in the master branch:
commit a6079cb653c88c8ab0ad65a131933c2303127181
Author: Olivier Sallou <[email protected]>
Date: Fri Apr 19 14:28:50 2013 +0200
Fix 705686, change classpath of tool BuildBamIndex
diff --git a/debian/bin/picard-tools b/debian/bin/picard-tools
index c4515b9..2bd95d5 100755
--- a/debian/bin/picard-tools
+++ b/debian/bin/picard-tools
@@ -18,7 +18,7 @@ case $command in
AddOrReplaceReadGroups)
main=net.sf.picard.sam.AddOrReplaceReadGroups;;
BamIndexStats) main=net.sf.picard.sam.BamIndexStats;;
BamToBfq) main=net.sf.picard.fastq.BamToBfq;;
- BuildBamIndex) main=net.sf.picard.util.BuildBamIndex;;
+ BuildBamIndex) main=net.sf.picard.sam.BuildBamIndex;;
CalculateHsMetrics)
main=net.sf.picard.analysis.directed.CalculateHsMetrics;;
CleanSam) main=net.sf.picard.sam.CleanSam;;
CollectAlignmentSummaryMetrics)
main=net.sf.picard.analysis.CollectAlignmentSummaryMetrics;;
diff --git a/debian/changelog b/debian/changelog
index 402a63a..5202145 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+picard-tools (1.82-2) unstable; urgency=low
+
+ * Fix classpath for BuildBamIndex (Closes: #705686).
+
+ -- Olivier Sallou <[email protected]> Fri, 19 Apr 2013 14:26:23 +0200
+
picard-tools (1.82-1) unstable; urgency=low
* New upstream release
--
manipulate SAM and BAM files
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