Author: ogi Date: 2013-04-24 12:30:53 +0000 (Wed, 24 Apr 2013) New Revision: 13394
Added: trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch Modified: trunk/packages/bowtie/trunk/debian/changelog trunk/packages/bowtie/trunk/debian/patches/series Log: Fix build failures on mips and mipsel. Modified: trunk/packages/bowtie/trunk/debian/changelog =================================================================== --- trunk/packages/bowtie/trunk/debian/changelog 2013-04-24 12:25:51 UTC (rev 13393) +++ trunk/packages/bowtie/trunk/debian/changelog 2013-04-24 12:30:53 UTC (rev 13394) @@ -1,3 +1,10 @@ +bowtie (1.0.0-3) unstable; urgency=low + + * New patch no_hash_style_both_for_mips.patch. + This fixes build errors on mips and mipsel. + + -- Ognyan Kulev <[email protected]> Wed, 24 Apr 2013 15:15:37 +0300 + bowtie (1.0.0-2) unstable; urgency=low * Requires version 1.3 of SeqAn. Added: trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch =================================================================== --- trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch (rev 0) +++ trunk/packages/bowtie/trunk/debian/patches/no_hash_style_both_for_mips.patch 2013-04-24 12:30:53 UTC (rev 13394) @@ -0,0 +1,20 @@ +Description: Disable -Wl,--hash-style=both on mips machines. + It's not supported on mips and mipsel ports and leads to build errors. +Author: Ognyan Kulev <[email protected]> +Forwarded: not-needed +Last-Update: 2013-04-24 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- bowtie-1.0.0.orig/Makefile ++++ bowtie-1.0.0/Makefile +@@ -45,7 +45,9 @@ + LINUX = 0 + ifneq (,$(findstring Linux,$(shell uname))) + LINUX = 1 +- EXTRA_FLAGS += -Wl,--hash-style=both ++ ifeq (,$(findstring mips,$(shell uname -m))) ++ EXTRA_FLAGS += -Wl,--hash-style=both ++ endif + endif + + MM_DEF = Modified: trunk/packages/bowtie/trunk/debian/patches/series =================================================================== --- trunk/packages/bowtie/trunk/debian/patches/series 2013-04-24 12:25:51 UTC (rev 13393) +++ trunk/packages/bowtie/trunk/debian/patches/series 2013-04-24 12:30:53 UTC (rev 13394) @@ -4,3 +4,4 @@ seqan-rename-ChunkPool.patch seqan-rename-fill-to-resize.patch disable_bits_flag.patch +no_hash_style_both_for_mips.patch _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
