The following commit has been merged in the master branch:
commit a29b7931e5a0f9265fb0fed49290d3b1b5c908cd
Author: Olivier Sallou <[email protected]>
Date: Wed May 1 09:33:23 2013 +0200
add/update classpath
diff --git a/debian/bin/picard-tools b/debian/bin/picard-tools
index 2bd95d5..e892287 100755
--- a/debian/bin/picard-tools
+++ b/debian/bin/picard-tools
@@ -62,4 +62,4 @@ EOF
esac
p=/usr/share/java
-exec java -XX:MaxPermSize=256m -cp $p/jbzip2.jar:$p/picard.jar:$p/sam.jar
$main "$@"
+exec java -XX:MaxPermSize=256m -cp
$p/jbzip2.jar:$p/picard.jar:$p/sam.jar:$p/cofoja.jar:$p/commons-jexl2.jar $main
"$@"
diff --git a/debian/picard-tools.classpath b/debian/picard-tools.classpath
new file mode 100644
index 0000000..7034c2e
--- /dev/null
+++ b/debian/picard-tools.classpath
@@ -0,0 +1 @@
+usr/share/java/commons-jexl2.jar usr/share/java/cofoja.jar
usr/share/java/jbzip2.jar usr/share/java/sam.jar
--
manipulate SAM and BAM files
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