Author: moeller Date: 2013-05-02 20:17:12 +0000 (Thu, 02 May 2013) New Revision: 13471
Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/control trunk/packages/infernal/trunk/debian/infernal.docs trunk/packages/infernal/trunk/debian/infernal.install trunk/packages/infernal/trunk/debian/infernal.manpages trunk/packages/infernal/trunk/debian/patches/series trunk/packages/infernal/trunk/debian/rules trunk/packages/infernal/trunk/debian/watch Log: New upstream version. Modified: trunk/packages/infernal/trunk/debian/changelog =================================================================== --- trunk/packages/infernal/trunk/debian/changelog 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/changelog 2013-05-02 20:17:12 UTC (rev 13471) @@ -1,3 +1,14 @@ +infernal (1.1~rc2-1) unstable; urgency=low + + * New upstream version - aiming to support RNAWorld BOINC project, + with many thanks and regards to Yoyo! + - cmscore no longer available + * Bumped policy to 3.9.4 (no changes needed) + - introduced hardening, with it build dep on + dpkg-dev (>= 1.16.1~) + + -- Steffen Moeller <[email protected]> Wed, 01 May 2013 20:24:17 +0200 + infernal (1.0.2-3) UNRELEASED; urgency=low [ Steffen Moeller ] Modified: trunk/packages/infernal/trunk/debian/control =================================================================== --- trunk/packages/infernal/trunk/debian/control 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/control 2013-05-02 20:17:12 UTC (rev 13471) @@ -6,8 +6,8 @@ Uploaders: Steffen Moeller <[email protected]>, Charles Plessy <[email protected]>, Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 7.0.50~), autotools-dev, quilt -Standards-Version: 3.9.3 +Build-Depends: dpkg-dev (>= 1.16.1~), debhelper (>= 7.0.50~), autotools-dev, quilt +Standards-Version: 3.9.4 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/infernal/trunk/ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/infernal/trunk/ Homepage: http://infernal.janelia.org/ @@ -16,9 +16,9 @@ Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: inference of RNA secondary structural alignments - Infernal ("INFERence of RNA ALignment") is for searching DNA sequence - databases for RNA structure and sequence similarities. It is an - implementation of a special case of profile stochastic context-free + Infernal ("INFERence of RNA ALignment") searches DNA sequence + databases for RNA structure and sequence similarities. It provides an + implementation of a special variant of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of @@ -32,8 +32,8 @@ Section: doc Depends: ${shlibs:Depends}, ${misc:Depends} Description: inference of RNA secondary structural alignments – documentation - Infernal ("INFERence of RNA ALignment") is for searching DNA sequence - databases for RNA structure and sequence similarities. It is an + Infernal ("INFERence of RNA ALignment") searches DNA sequence + databases for RNA structure and sequence similarities. It provides an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA Modified: trunk/packages/infernal/trunk/debian/infernal.docs =================================================================== --- trunk/packages/infernal/trunk/debian/infernal.docs 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/infernal.docs 2013-05-02 20:17:12 UTC (rev 13471) @@ -1,3 +1,2 @@ -00README -00README-MPI -documentation/release-notes/RELEASE-1.0 +README +RELEASE-NOTES Modified: trunk/packages/infernal/trunk/debian/infernal.install =================================================================== --- trunk/packages/infernal/trunk/debian/infernal.install 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/infernal.install 2013-05-02 20:17:12 UTC (rev 13471) @@ -1,9 +1 @@ -src/cmalign usr/bin -src/cmbuild usr/bin -src/cmcalibrate usr/bin -src/cmemit usr/bin -src/cmscore usr/bin -src/cmsearch usr/bin -src/cmstat usr/bin -src/trcyk usr/bin -src/truncyk_check usr/bin +bin/* usr/bin Modified: trunk/packages/infernal/trunk/debian/infernal.manpages =================================================================== --- trunk/packages/infernal/trunk/debian/infernal.manpages 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/infernal.manpages 2013-05-02 20:17:12 UTC (rev 13471) @@ -1 +1,3 @@ -documentation/manpages/* +#documentation/manpages/* +#share/man/man1/*.1 +debian/tmp/share/man/man1/*.1 Modified: trunk/packages/infernal/trunk/debian/patches/series =================================================================== --- trunk/packages/infernal/trunk/debian/patches/series 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/patches/series 2013-05-02 20:17:12 UTC (rev 13471) @@ -1 +1 @@ -format_security.patch +#format_security.patch Modified: trunk/packages/infernal/trunk/debian/rules =================================================================== --- trunk/packages/infernal/trunk/debian/rules 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/rules 2013-05-02 20:17:12 UTC (rev 13471) @@ -1,13 +1,17 @@ #!/usr/bin/make -f # -*- makefile -*- +export DEB_BUILD_MAINT_OPTIONS = hardening=+all +DPKG_EXPORT_BUILDFLAGS = 1 +include /usr/share/dpkg/buildflags.mk + %: dh $@ --with quilt override_dh_auto_clean: if [ -r Makefile ]; then $(MAKE) distclean; fi - cd documentation/userguide; make distclean - cd easel/documentation; make distclean + -cd documentation/userguide && if [ -r Makefile ]; then make distclean; fi + -cd easel/documentation && if [ -r Makefile ]; then make distclean; fi dh_clean *.1 */*.log *.log */Makefile Makefile documentation/manpages/*.1 override_dh_compress : Modified: trunk/packages/infernal/trunk/debian/watch =================================================================== --- trunk/packages/infernal/trunk/debian/watch 2013-05-02 17:49:18 UTC (rev 13470) +++ trunk/packages/infernal/trunk/debian/watch 2013-05-02 20:17:12 UTC (rev 13471) @@ -1,3 +1,3 @@ version=3 opts="passive,uversionmangle=s/(rc\d+)/~$1/" \ - ftp://infernal.janelia.org/pub/software/infernal/infernal-(.*)\.tar\.gz + ftp://infernal.janelia.org/pub/software/infernal/infernal-([^-]*)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
