The following commit has been merged in the master branch:
commit 971ba31ba41b7abb0ce7e709bedbcb28d495d7e7
Author: Alexandre Mestiashvili <[email protected]>
Date:   Tue May 7 23:17:37 2013 +0200

    d/get-orig-source: place tarballs to ../tarballs/

diff --git a/debian/get-orig-source b/debian/get-orig-source
index 7d3bfa1..7d86afb 100755
--- a/debian/get-orig-source
+++ b/debian/get-orig-source
@@ -3,12 +3,12 @@
 # stripping off SeqAn which is distributed in Debian.
 
 PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
-VERSION=`uscan --verbose --force-download | \
+mkdir -p ../tarballs
+VERSION=`uscan --verbose --force-download --destdir='../tarballs/' | \
     grep "Newest version on remote site is .* local version is .*" | \
     head -n 1 | \
     sed "s/Newest version on remote site is \([-0-9.].*\),.*/\1/"`
 
-mkdir -p ../tarballs
 cd ../tarballs
 
 UPSTREAMNAME=tophat

-- 
A spliced read mapper for RNA-Seq

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