Author: lkajan Date: 2013-05-16 16:28:21 +0000 (Thu, 16 May 2013) New Revision: 13607
Added: trunk/packages/metastudent/tags/1.0.8-2/ trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian trunk/packages/metastudent/tags/1.0.8-2/debian/changelog trunk/packages/metastudent/tags/1.0.8-2/debian/control trunk/packages/metastudent/tags/1.0.8-2/debian/rules Removed: trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian trunk/packages/metastudent/tags/1.0.8-2/debian/changelog trunk/packages/metastudent/tags/1.0.8-2/debian/control trunk/packages/metastudent/tags/1.0.8-2/debian/rules Log: [svn-buildpackage] Tagging metastudent 1.0.8-2 Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian =================================================================== --- trunk/packages/metastudent/trunk/debian/README.Debian 2013-05-16 15:15:39 UTC (rev 13605) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian 2013-05-16 16:28:21 UTC (rev 13607) @@ -1,5 +0,0 @@ -metastudent for Debian -====================== -metastudent searches through large data files (~400M compressed) in order to predict gene ontology terms. These data files are available from [1], and are released under the GPL-2+. metastudent automatically downloads the data files from [1], in case they are not yet present on the host machine. - -[1] ftp://rostlab.org/metastudent/metastudent-data_[0-9.]+.tar.gz Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian (from rev 13606, trunk/packages/metastudent/trunk/debian/README.Debian) =================================================================== --- trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian (rev 0) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/README.Debian 2013-05-16 16:28:21 UTC (rev 13607) @@ -0,0 +1,5 @@ +metastudent for Debian +====================== +metastudent searches through large data files (>100M compressed) in order to predict gene ontology terms. These data files are available from the metastudent-data package or [1], and are released under the GPL-2+. + +[1] ftp://rostlab.org/metastudent/metastudent-data_[0-9.]+.tar.gz Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/changelog =================================================================== --- trunk/packages/metastudent/trunk/debian/changelog 2013-05-16 15:15:39 UTC (rev 13605) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/changelog 2013-05-16 16:28:21 UTC (rev 13607) @@ -1,14 +0,0 @@ -metastudent (1.0.8-1.1) UNRELEASED; urgency=low - - * Non-maintainer upload. - * NOT RELEASED YET - - -- Laszlo Kajan <[email protected]> Wed, 08 May 2013 17:23:51 +0200 - -metastudent (1.0.8-1) unstable; urgency=low - - * Initial release (Closes: #705537) - [Laszlo Kajan <[email protected]>] - * Added BMC Bioinfo paper to d/upstream. - - -- Tobias Hamp <[email protected]> Mon, 15 Apr 2013 12:08:13 +0100 Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/changelog (from rev 13606, trunk/packages/metastudent/trunk/debian/changelog) =================================================================== --- trunk/packages/metastudent/tags/1.0.8-2/debian/changelog (rev 0) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/changelog 2013-05-16 16:28:21 UTC (rev 13607) @@ -0,0 +1,13 @@ +metastudent (1.0.8-2) unstable; urgency=low + + * This version depends on data packaged as metastudent-data. + + -- Laszlo Kajan <[email protected]> Wed, 08 May 2013 17:23:51 +0200 + +metastudent (1.0.8-1) unstable; urgency=low + + * Initial release (Closes: #705537) + [Laszlo Kajan <[email protected]>] + * Added BMC Bioinfo paper to d/upstream. + + -- Tobias Hamp <[email protected]> Mon, 15 Apr 2013 12:08:13 +0100 Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/control =================================================================== --- trunk/packages/metastudent/trunk/debian/control 2013-05-16 15:15:39 UTC (rev 13605) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/control 2013-05-16 16:28:21 UTC (rev 13607) @@ -1,24 +0,0 @@ -Source: metastudent -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Tobias Hamp <[email protected]>, Laszlo Kajan <[email protected]> -Build-Depends-Indep: debhelper (>=8~), python-support (>= 0.6), python (>= 2.6), javahelper (>=0.25), default-jdk -XS-Python-Version: >= 2.6 -Standards-Version: 3.9.4 -Homepage: https://rostlab.org/owiki/index.php/Metastudent -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent/trunk/ - -Package: metastudent -Architecture: all -Homepage: http://www.rostlab.org -Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6), blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl, metastudent-data (>=1.0.1), perl -Description: predictor of Gene Ontology terms from protein sequence - Often, only the sequence of a protein is known, but - not its functions. Metastudent will try to predict - missing functional annotations through homology searches (BLAST). - . - All predicted functions correspond to Gene Ontology (GO) - terms from the Molecular Function Ontology (MFO) and the Biological Process - Ontology (BPO) and are associated with a reliability score. Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/control (from rev 13606, trunk/packages/metastudent/trunk/debian/control) =================================================================== --- trunk/packages/metastudent/tags/1.0.8-2/debian/control (rev 0) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/control 2013-05-16 16:28:21 UTC (rev 13607) @@ -0,0 +1,24 @@ +Source: metastudent +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Tobias Hamp <[email protected]>, Laszlo Kajan <[email protected]> +Build-Depends-Indep: debhelper (>=8~), python-support (>= 0.6), python (>= 2.6), javahelper (>=0.25), default-jdk +XS-Python-Version: >= 2.6 +Standards-Version: 3.9.4 +Homepage: https://rostlab.org/owiki/index.php/Metastudent +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/metastudent/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/metastudent/trunk/ + +Package: metastudent +Architecture: all +Homepage: http://www.rostlab.org +Depends: ${misc:Depends}, ${perl:Depends}, ${python:Depends}, python (>= 2.6), blast2, default-jre, libgo-perl, libipc-run-perl, libgraphviz-perl, metastudent-data (>=1.0.1), perl +Description: predictor of Gene Ontology terms from protein sequence + Often, only the sequence of a protein is known, but + not its functions. Metastudent will try to predict + missing functional annotations through homology searches (BLAST). + . + All predicted functions correspond to Gene Ontology (GO) + terms from the Molecular Function Ontology (MFO) and the Biological Process + Ontology (BPO) and are associated with a reliability score. Deleted: trunk/packages/metastudent/tags/1.0.8-2/debian/rules =================================================================== --- trunk/packages/metastudent/trunk/debian/rules 2013-05-16 15:15:39 UTC (rev 13605) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/rules 2013-05-16 16:28:21 UTC (rev 13607) @@ -1,16 +0,0 @@ -#!/usr/bin/make -f -# Uncomment this to turn on verbose mode. -#export DH_VERBOSE=1 - -JAVA_HOME=/usr/lib/jvm/default-java - -%: - dh $@ --with javahelper - -override_dh_auto_clean: - dh_auto_clean - rm -f metastudent.1 - -override_dh_auto_install: - dh_auto_install - find . -regex ".*/knn_weighted\|.*/CafaWrapper1\.pl\|.*/CafaWrapper2\.pl\|.*/CafaWrapper3\.pl\|.*/CafaWrapper3_new\.pl\|.*/exercise3\.pl\|.*/treehandler\.pl\|.*/validate\.pl" -exec chmod +x {} \; Copied: trunk/packages/metastudent/tags/1.0.8-2/debian/rules (from rev 13606, trunk/packages/metastudent/trunk/debian/rules) =================================================================== --- trunk/packages/metastudent/tags/1.0.8-2/debian/rules (rev 0) +++ trunk/packages/metastudent/tags/1.0.8-2/debian/rules 2013-05-16 16:28:21 UTC (rev 13607) @@ -0,0 +1,20 @@ +#!/usr/bin/make -f +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +JAVA_HOME=/usr/lib/jvm/default-java + +%: + dh $@ --with javahelper + +override_dh_auto_clean: + dh_auto_clean + rm -f metastudent.1 + +override_dh_auto_install: + dh_auto_install + find . -regex ".*/knn_weighted\|.*/CafaWrapper1\.pl\|.*/CafaWrapper2\.pl\|.*/CafaWrapper3\.pl\|.*/CafaWrapper3_new\.pl\|.*/exercise3\.pl\|.*/treehandler\.pl\|.*/validate\.pl" -exec chmod +x {} \; + +get-orig-source: + mkdir -p ../tarballs + uscan --verbose --force-download --destdir=../tarballs _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
