Author: osallou-guest Date: 2013-05-28 10:38:12 +0000 (Tue, 28 May 2013) New Revision: 13724
Added: trunk/packages/logol/tags/1.6.2-1/ trunk/packages/logol/tags/1.6.2-1/debian/changelog trunk/packages/logol/tags/1.6.2-1/debian/control trunk/packages/logol/tags/1.6.2-1/debian/docs trunk/packages/logol/tags/1.6.2-1/debian/rules trunk/packages/logol/tags/1.6.2-1/debian/watch Removed: trunk/packages/logol/tags/1.6.2-1/debian/changelog trunk/packages/logol/tags/1.6.2-1/debian/control trunk/packages/logol/tags/1.6.2-1/debian/docs trunk/packages/logol/tags/1.6.2-1/debian/rules trunk/packages/logol/tags/1.6.2-1/debian/watch Log: [svn-buildpackage] Tagging logol 1.6.2-1 Deleted: trunk/packages/logol/tags/1.6.2-1/debian/changelog =================================================================== --- trunk/packages/logol/trunk/debian/changelog 2013-05-23 12:12:13 UTC (rev 13703) +++ trunk/packages/logol/tags/1.6.2-1/debian/changelog 2013-05-28 10:38:12 UTC (rev 13724) @@ -1,49 +0,0 @@ -logol (1.6.1-1) unstable; urgency=low - - * New upstream release (bug fixes) - - -- Olivier Sallou <[email protected]> Tue, 09 Apr 2013 16:57:33 +0200 - -logol (1.6.0-1) unstable; urgency=low - - * New upstream release with bug fixes - - -- Olivier Sallou <[email protected]> Fri, 15 Feb 2013 10:05:50 +0100 - -logol (1.5.0-6) unstable; urgency=low - - [ Olivier Sallou ] - * debian/control: Fix typo in description (Closes: #685079). - Thanks to Erik Esterer <[email protected]> - - -- Olivier Sallou <[email protected]> Fri, 17 Aug 2012 08:00:58 +0200 - -logol (1.5.0-5) unstable; urgency=low - - [ Olivier Sallou] - * Transition package to use default java implementation: - From [email protected] (Closes: #684158) - - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency - to default-jre | java6-runtime. - - d/rules: Specify source/target = 1.5 to ensure backwards compatible - bytecode is built. - - -- Olivier Sallou <[email protected]> Tue, 07 Aug 2012 15:18:43 +0200 - -logol (1.5.0-4) unstable; urgency=low - - * debian/postinst: remove directory permissions (Closes: #683647). - - -- Olivier Sallou <[email protected]> Thu, 02 Aug 2012 17:09:31 +0200 - -logol (1.5.0-2) unstable; urgency=low - - * Support Arch dependent and arch independent separate builds. - - -- Olivier Sallou <[email protected]> Sun, 01 Jul 2012 23:49:16 +0200 - -logol (1.5.0-1) unstable; urgency=low - - * Initial release (Closes: #678373). - - -- Olivier Sallou <[email protected]> Thu, 21 Jun 2012 12:50:22 +0200 Copied: trunk/packages/logol/tags/1.6.2-1/debian/changelog (from rev 13723, trunk/packages/logol/trunk/debian/changelog) =================================================================== --- trunk/packages/logol/tags/1.6.2-1/debian/changelog (rev 0) +++ trunk/packages/logol/tags/1.6.2-1/debian/changelog 2013-05-28 10:38:12 UTC (rev 13724) @@ -0,0 +1,55 @@ +logol (1.6.2-1) unstable; urgency=low + + * New upstream release (bug fixes) + + -- Olivier Sallou <[email protected]> Fri, 24 May 2013 14:37:24 +0200 + +logol (1.6.1-1) unstable; urgency=low + + * New upstream release (bug fixes) + + -- Olivier Sallou <[email protected]> Tue, 09 Apr 2013 16:57:33 +0200 + +logol (1.6.0-1) unstable; urgency=low + + * New upstream release with bug fixes + + -- Olivier Sallou <[email protected]> Fri, 15 Feb 2013 10:05:50 +0100 + +logol (1.5.0-6) unstable; urgency=low + + [ Olivier Sallou ] + * debian/control: Fix typo in description (Closes: #685079). + Thanks to Erik Esterer <[email protected]> + + -- Olivier Sallou <[email protected]> Fri, 17 Aug 2012 08:00:58 +0200 + +logol (1.5.0-5) unstable; urgency=low + + [ Olivier Sallou] + * Transition package to use default java implementation: + From [email protected] (Closes: #684158) + - d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency + to default-jre | java6-runtime. + - d/rules: Specify source/target = 1.5 to ensure backwards compatible + bytecode is built. + + -- Olivier Sallou <[email protected]> Tue, 07 Aug 2012 15:18:43 +0200 + +logol (1.5.0-4) unstable; urgency=low + + * debian/postinst: remove directory permissions (Closes: #683647). + + -- Olivier Sallou <[email protected]> Thu, 02 Aug 2012 17:09:31 +0200 + +logol (1.5.0-2) unstable; urgency=low + + * Support Arch dependent and arch independent separate builds. + + -- Olivier Sallou <[email protected]> Sun, 01 Jul 2012 23:49:16 +0200 + +logol (1.5.0-1) unstable; urgency=low + + * Initial release (Closes: #678373). + + -- Olivier Sallou <[email protected]> Thu, 21 Jun 2012 12:50:22 +0200 Deleted: trunk/packages/logol/tags/1.6.2-1/debian/control =================================================================== --- trunk/packages/logol/trunk/debian/control 2013-05-23 12:12:13 UTC (rev 13703) +++ trunk/packages/logol/tags/1.6.2-1/debian/control 2013-05-28 10:38:12 UTC (rev 13724) @@ -1,38 +0,0 @@ -Source: logol -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Olivier Sallou <[email protected]> -DM-Upload-Allowed: yes -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/logol/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/logol/trunk/ -Build-Depends: debhelper (>= 8.0.0),default-jdk (>= 1:1.6),ant,ruby (>=1.8),rubygems, gawk, swi-prolog, - libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, - libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libgnumail-java, - liblog4j1.2-java,texlive, tex4ht, libncursesw5-dev, ruby-cassiopee, ant-optional -Standards-Version: 3.9.3 -Homepage: http://logol.genouest.org - -Package: logol -Architecture: all -Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre | java6-runtime, ruby (>=1.8),rubygems, gawk, - libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, - libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, libgnumail-java, liblog4j1.2-java, - ruby-cassiopee, logol-bin -Description: Pattern matching tool using Logol language - Logol is a pattern matching tool using the Logol language. - It searches with a specific grammar a pattern in small - or large sequence (dna, rna, protein). It provides complete - result matching with the original grammar in the results. - -Package: logol-bin -Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends}, swi-prolog, libncursesw5 -Description: Pattern matching tool using Logol language - This package contains the Prolog binaries used by Logol to parse - the sequence and match the grammar. - . - Logol is a pattern matching tool using the Logol language. - It searches with a specific grammar a pattern in small - or large sequence (dna, rna, protein). It provides complete - result matching with the original grammar in the results. Copied: trunk/packages/logol/tags/1.6.2-1/debian/control (from rev 13722, trunk/packages/logol/trunk/debian/control) =================================================================== --- trunk/packages/logol/tags/1.6.2-1/debian/control (rev 0) +++ trunk/packages/logol/tags/1.6.2-1/debian/control 2013-05-28 10:38:12 UTC (rev 13724) @@ -0,0 +1,38 @@ +Source: logol +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Olivier Sallou <[email protected]> +DM-Upload-Allowed: yes +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/logol/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/logol/trunk/ +Build-Depends: debhelper (>= 8.0.0),default-jdk (>= 1:1.6),ant,ruby (>=1.8),rubygems, gawk, swi-prolog (>=6.2.6-3), + libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, + libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libgnumail-java, + liblog4j1.2-java,texlive, tex4ht, libncursesw5-dev, ruby-cassiopee, ant-optional +Standards-Version: 3.9.3 +Homepage: http://logol.genouest.org + +Package: logol +Architecture: all +Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre | java6-runtime, ruby (>=1.8),rubygems, gawk, + libbiojava-java, libdrmaa-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, + libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, libgnumail-java, liblog4j1.2-java, + ruby-cassiopee, logol-bin +Description: Pattern matching tool using Logol language + Logol is a pattern matching tool using the Logol language. + It searches with a specific grammar a pattern in small + or large sequence (dna, rna, protein). It provides complete + result matching with the original grammar in the results. + +Package: logol-bin +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, swi-prolog(>=6.2.6-3), libncursesw5 +Description: Pattern matching tool using Logol language + This package contains the Prolog binaries used by Logol to parse + the sequence and match the grammar. + . + Logol is a pattern matching tool using the Logol language. + It searches with a specific grammar a pattern in small + or large sequence (dna, rna, protein). It provides complete + result matching with the original grammar in the results. Deleted: trunk/packages/logol/tags/1.6.2-1/debian/docs =================================================================== --- trunk/packages/logol/trunk/debian/docs 2013-05-23 12:12:13 UTC (rev 13703) +++ trunk/packages/logol/tags/1.6.2-1/debian/docs 2013-05-28 10:38:12 UTC (rev 13724) @@ -1,8 +0,0 @@ -changelog -README.txt -prolog/SWI-README -Doc/LogolGrammar.txt -Doc/tutorial.pdf -Doc/logol-usage.pdf -# Not available, requires antlrworks for generation -#Doc/logol-grammar.pdf Copied: trunk/packages/logol/tags/1.6.2-1/debian/docs (from rev 13704, trunk/packages/logol/trunk/debian/docs) =================================================================== --- trunk/packages/logol/tags/1.6.2-1/debian/docs (rev 0) +++ trunk/packages/logol/tags/1.6.2-1/debian/docs 2013-05-28 10:38:12 UTC (rev 13724) @@ -0,0 +1,9 @@ +changelog +README.txt +prolog/SWI-README +Doc/LogolGrammar.txt +Doc/tutorial.pdf +Doc/logol-usage.pdf +Doc/logolParser.pdf +# Not available, requires antlrworks for generation +#Doc/logol-grammar.pdf Deleted: trunk/packages/logol/tags/1.6.2-1/debian/rules =================================================================== --- trunk/packages/logol/trunk/debian/rules 2013-05-23 12:12:13 UTC (rev 13703) +++ trunk/packages/logol/tags/1.6.2-1/debian/rules 2013-05-28 10:38:12 UTC (rev 13724) @@ -1,46 +0,0 @@ -#!/usr/bin/make -f -# -*- makefile -*- - -# Uncomment this to turn on verbose mode. -#export DH_VERBOSE=1 - -DEB_ANT_BUILD_TARGET=create-jar,test_swi -DEB_ANT_ARGS=-Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 - -%: - dh $@ - -override_dh_auto_build: - dh_auto_build -- $(DEB_ANT_ARGS) - -override_dh_install: - dh_install - rm -f debian/logol/usr/share/logol/prolog/*.c - rm -f debian/logol/usr/share/logol/prolog/*.exe - rm -f debian/logol/usr/share/logol/prolog/logol.properties - if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi - if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi - if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi - if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi - # Not available, requires pldoc, not currently available in Debian SWI-Prolog - #cp Doc/logolParser.pdf debian/logol/usr/share/doc/logol/ - -override_dh_clean: - dh_clean - rm -f Swi*.xml - rm -f prolog/*.exe - rm -f lib/*.jar - rm -f *.log - rm -f src/org/irisa/genouest/logol/parser/* - rm -f tools/suffixSearch.sh - -override_dh_installexamples: - rm -f test/tmp/* - rm -f test/results/* - dh_installexamples - -override_dh_strip: - dh_strip -Xlogol.exe -Xpreanalyse.exe - -get-orig-source: - debian/get-orig-source.sh Copied: trunk/packages/logol/tags/1.6.2-1/debian/rules (from rev 13704, trunk/packages/logol/trunk/debian/rules) =================================================================== --- trunk/packages/logol/tags/1.6.2-1/debian/rules (rev 0) +++ trunk/packages/logol/tags/1.6.2-1/debian/rules 2013-05-28 10:38:12 UTC (rev 13724) @@ -0,0 +1,47 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +DEB_ANT_BUILD_TARGET=create-jar,test_swi +DEB_ANT_ARGS=-Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 + +%: + dh $@ + +override_dh_auto_build: + dh_auto_build -- $(DEB_ANT_ARGS) + ant -f build.xml doc + +override_dh_install: + dh_install + rm -f debian/logol/usr/share/logol/prolog/*.c + rm -f debian/logol/usr/share/logol/prolog/*.exe + rm -f debian/logol/usr/share/logol/prolog/logol.properties + if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi + if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi + if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi + if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi + # Not available, requires pldoc, not currently available in Debian SWI-Prolog + #cp Doc/logolParser.pdf debian/logol/usr/share/doc/logol/ + +override_dh_clean: + dh_clean + rm -f Swi*.xml + rm -f prolog/*.exe + rm -f lib/*.jar + rm -f *.log + rm -f src/org/irisa/genouest/logol/parser/* + rm -f tools/suffixSearch.sh + +override_dh_installexamples: + rm -f test/tmp/* + rm -f test/results/* + dh_installexamples + +override_dh_strip: + dh_strip -Xlogol.exe -Xpreanalyse.exe + +get-orig-source: + debian/get-orig-source.sh Deleted: trunk/packages/logol/tags/1.6.2-1/debian/watch =================================================================== --- trunk/packages/logol/trunk/debian/watch 2013-05-23 12:12:13 UTC (rev 13703) +++ trunk/packages/logol/tags/1.6.2-1/debian/watch 2013-05-28 10:38:12 UTC (rev 13724) @@ -1,2 +0,0 @@ -version=3 -https://gforge.inria.fr/frs/?group_id=1318 .*/logol-(\d[\d.-]+)\.tar\.bz2 Copied: trunk/packages/logol/tags/1.6.2-1/debian/watch (from rev 13722, trunk/packages/logol/trunk/debian/watch) =================================================================== --- trunk/packages/logol/tags/1.6.2-1/debian/watch (rev 0) +++ trunk/packages/logol/tags/1.6.2-1/debian/watch 2013-05-28 10:38:12 UTC (rev 13724) @@ -0,0 +1,2 @@ +version=3 +https://gforge.inria.fr/frs/?group_id=1318 .*/logol_(\d[\d.-]+)\.orig\.tar\.bz2 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
