Author: plessy Date: 2013-05-29 10:18:01 +0000 (Wed, 29 May 2013) New Revision: 13741
Modified: trunk/packages/staden-io-lib/trunk/debian/changelog trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols Log: New symbols for libstaden-read1.symbols. Modified: trunk/packages/staden-io-lib/trunk/debian/changelog =================================================================== --- trunk/packages/staden-io-lib/trunk/debian/changelog 2013-05-29 09:51:34 UTC (rev 13740) +++ trunk/packages/staden-io-lib/trunk/debian/changelog 2013-05-29 10:18:01 UTC (rev 13741) @@ -5,6 +5,7 @@ * Removed obsolete DM-Upload-Allowed field. * Machine-readable Debian copyright file. * Normalised debian/control with config-model-edit. + * New symbols for libstaden-read1. -- Charles Plessy <[email protected]> Wed, 29 May 2013 18:25:50 +0900 Modified: trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols =================================================================== --- trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols 2013-05-29 09:51:34 UTC (rev 13740) +++ trunk/packages/staden-io-lib/trunk/debian/libstaden-read1.symbols 2013-05-29 10:18:01 UTC (rev 13741) @@ -31,8 +31,31 @@ HashTableSearch@Base 1.12.4 HashTableStats@Base 1.12.4 HashTcl@Base 1.12.4 + MD5_Final@Base 1.13.1 + MD5_Init@Base 1.13.1 + MD5_Update@Base 1.13.1 abi_reset_data_counts@Base 1.12.4 abi_set_data_counts@Base 1.12.4 + bam_aux_A@Base 1.13.1 + bam_aux_Z@Base 1.13.1 + bam_aux_add@Base 1.13.1 + bam_aux_add_data@Base 1.13.1 + bam_aux_add_from_sam@Base 1.13.1 + bam_aux_add_vec@Base 1.13.1 + bam_aux_d@Base 1.13.1 + bam_aux_f@Base 1.13.1 + bam_aux_find@Base 1.13.1 + bam_aux_i@Base 1.13.1 + bam_aux_iter@Base 1.13.1 + bam_aux_size_vec@Base 1.13.1 + bam_close@Base 1.13.1 + bam_construct_seq@Base 1.13.1 + bam_get_line@Base 1.13.1 + bam_get_seq@Base 1.13.1 + bam_next_seq@Base 1.13.1 + bam_open@Base 1.13.1 + bam_put_seq@Base 1.13.1 + bam_write_header@Base 1.13.1 be_read_int_1@Base 1.12.4 be_read_int_2@Base 1.12.4 be_read_int_4@Base 1.12.4 @@ -57,6 +80,114 @@ compressed_file_exists@Base 1.12.4 conf2str@Base 1.12.4 construct_trace_name@Base 1.12.4 + cram_beta_decode@Base 1.13.1 + cram_beta_decode_free@Base 1.13.1 + cram_beta_decode_init@Base 1.13.1 + cram_beta_encode_char@Base 1.13.1 + cram_beta_encode_free@Base 1.13.1 + cram_beta_encode_init@Base 1.13.1 + cram_beta_encode_int@Base 1.13.1 + cram_beta_encode_store@Base 1.13.1 + cram_block_method2str@Base 1.13.1 + cram_byte_array_len_decode@Base 1.13.1 + cram_byte_array_len_decode_free@Base 1.13.1 + cram_byte_array_len_decode_init@Base 1.13.1 + cram_byte_array_len_encode@Base 1.13.1 + cram_byte_array_len_encode_free@Base 1.13.1 + cram_byte_array_len_encode_init@Base 1.13.1 + cram_byte_array_len_encode_store@Base 1.13.1 + cram_byte_array_stop_decode_block@Base 1.13.1 + cram_byte_array_stop_decode_char@Base 1.13.1 + cram_byte_array_stop_decode_free@Base 1.13.1 + cram_byte_array_stop_decode_init@Base 1.13.1 + cram_byte_array_stop_encode@Base 1.13.1 + cram_byte_array_stop_encode_free@Base 1.13.1 + cram_byte_array_stop_encode_init@Base 1.13.1 + cram_byte_array_stop_encode_store@Base 1.13.1 + cram_close@Base 1.13.1 + cram_compress_block@Base 1.13.1 + cram_content_type2str@Base 1.13.1 + cram_decode_TD@Base 1.13.1 + cram_decode_compression_header@Base 1.13.1 + cram_decode_slice@Base 1.13.1 + cram_decode_slice_header@Base 1.13.1 + cram_decoder_init@Base 1.13.1 + cram_encode_compression_header@Base 1.13.1 + cram_encode_container@Base 1.13.1 + cram_encode_slice_header@Base 1.13.1 + cram_encoder_init@Base 1.13.1 + cram_encoding2str@Base 1.13.1 + cram_eof@Base 1.13.1 + cram_external_decode_block@Base 1.13.1 + cram_external_decode_char@Base 1.13.1 + cram_external_decode_free@Base 1.13.1 + cram_external_decode_init@Base 1.13.1 + cram_external_decode_int@Base 1.13.1 + cram_external_encode@Base 1.13.1 + cram_external_encode_free@Base 1.13.1 + cram_external_encode_init@Base 1.13.1 + cram_external_encode_store@Base 1.13.1 + cram_flush@Base 1.13.1 + cram_flush_container@Base 1.13.1 + cram_free_block@Base 1.13.1 + cram_free_compression_header@Base 1.13.1 + cram_free_container@Base 1.13.1 + cram_free_file_def@Base 1.13.1 + cram_free_slice@Base 1.13.1 + cram_free_slice_header@Base 1.13.1 + cram_gamma_decode@Base 1.13.1 + cram_gamma_decode_free@Base 1.13.1 + cram_gamma_decode_init@Base 1.13.1 + cram_get_bam_seq@Base 1.13.1 + cram_get_ref@Base 1.13.1 + cram_get_seq@Base 1.13.1 + cram_huffman_decode_char0@Base 1.13.1 + cram_huffman_decode_char@Base 1.13.1 + cram_huffman_decode_free@Base 1.13.1 + cram_huffman_decode_init@Base 1.13.1 + cram_huffman_decode_int0@Base 1.13.1 + cram_huffman_decode_int@Base 1.13.1 + cram_huffman_encode_char0@Base 1.13.1 + cram_huffman_encode_char@Base 1.13.1 + cram_huffman_encode_free@Base 1.13.1 + cram_huffman_encode_init@Base 1.13.1 + cram_huffman_encode_int0@Base 1.13.1 + cram_huffman_encode_int@Base 1.13.1 + cram_huffman_encode_store@Base 1.13.1 + cram_index_free@Base 1.13.1 + cram_index_load@Base 1.13.1 + cram_index_query@Base 1.13.1 + cram_load_reference@Base 1.13.1 + cram_new_block@Base 1.13.1 + cram_new_compression_header@Base 1.13.1 + cram_new_container@Base 1.13.1 + cram_new_metrics@Base 1.13.1 + cram_new_slice@Base 1.13.1 + cram_open@Base 1.13.1 + cram_put_bam_seq@Base 1.13.1 + cram_read_SAM_hdr@Base 1.13.1 + cram_read_block@Base 1.13.1 + cram_read_container@Base 1.13.1 + cram_read_file_def@Base 1.13.1 + cram_read_slice@Base 1.13.1 + cram_seek@Base 1.13.1 + cram_seek_to_refpos@Base 1.13.1 + cram_set_option@Base 1.13.1 + cram_set_voption@Base 1.13.1 + cram_stats_add@Base 1.13.1 + cram_stats_create@Base 1.13.1 + cram_stats_del@Base 1.13.1 + cram_stats_dump@Base 1.13.1 + cram_stats_encoding@Base 1.13.1 + cram_stats_free@Base 1.13.1 + cram_subexp_decode@Base 1.13.1 + cram_subexp_decode_free@Base 1.13.1 + cram_subexp_decode_init@Base 1.13.1 + cram_uncompress_block@Base 1.13.1 + cram_write_SAM_hdr@Base 1.13.1 + cram_write_block@Base 1.13.1 + cram_write_container@Base 1.13.1 + cram_write_file_def@Base 1.13.1 ctfFRead@Base 1.12.4 ctfFWrite@Base 1.12.4 decode_sff_common_header@Base 1.12.4 @@ -68,6 +199,38 @@ decorrelate4@Base 1.12.4 delete_ztr@Base 1.12.4 determine_trace_type@Base 1.12.4 + dstring_append@Base 1.13.1 + dstring_append_char@Base 1.13.1 + dstring_append_hex_encoded@Base 1.13.1 + dstring_append_int@Base 1.13.1 + dstring_appendf@Base 1.13.1 + dstring_create@Base 1.13.1 + dstring_create_with@Base 1.13.1 + dstring_delete@Base 1.13.1 + dstring_destroy@Base 1.13.1 + dstring_dinsert@Base 1.13.1 + dstring_dreplace@Base 1.13.1 + dstring_empty@Base 1.13.1 + dstring_escape_html@Base 1.13.1 + dstring_find@Base 1.13.1 + dstring_find_replace@Base 1.13.1 + dstring_find_replace_all@Base 1.13.1 + dstring_htmlise_links@Base 1.13.1 + dstring_insert@Base 1.13.1 + dstring_insertf@Base 1.13.1 + dstring_length@Base 1.13.1 + dstring_nappend@Base 1.13.1 + dstring_ninsert@Base 1.13.1 + dstring_nprepend@Base 1.13.1 + dstring_perror@Base 1.13.1 + dstring_prepend@Base 1.13.1 + dstring_prependf@Base 1.13.1 + dstring_refresh_length@Base 1.13.1 + dstring_replace@Base 1.13.1 + dstring_resize@Base 1.13.1 + dstring_str@Base 1.13.1 + dstring_to_html@Base 1.13.1 + dstring_vinsertf@Base 1.13.1 dump_labels@Base 1.12.4 eflt_feature_ids@Base 1.12.4 encode_sff_common_header@Base 1.12.4 @@ -97,6 +260,7 @@ exp_set_entry@Base 1.12.4 expand_8to16@Base 1.12.4 expand_8to32@Base 1.12.4 + expand_cache_path@Base 1.13.1 expcr_@Base 1.12.4 exper_@Base 1.12.4 expkil_@Base 1.12.4 @@ -114,6 +278,7 @@ fdetermine_trace_type@Base 1.12.4 file_exists@Base 1.12.4 file_size@Base 1.12.4 + find_file_url@Base 1.13.1 flen@Base 1.12.4 follow1@Base 1.12.4 fopen_compressed@Base 1.12.4 @@ -156,6 +321,10 @@ ichebcomp@Base 1.12.4 ichebuncomp@Base 1.12.4 init_decode_tables@Base 1.12.4 + int32_decode@Base 1.13.1 + int32_encode@Base 1.13.1 + int32_get@Base 1.13.1 + int32_put@Base 1.13.1 int_to_float@Base 1.12.4 iolib_get_exp_path@Base 1.12.4 iolib_get_trace_path@Base 1.12.4 @@ -164,6 +333,9 @@ is_directory@Base 1.12.4 is_file@Base 1.12.4 is_scf@Base 1.12.4 + itf8_decode@Base 1.13.1 + itf8_encode@Base 1.13.1 + itf8_put_blk@Base 1.13.1 le_read_int_1@Base 1.12.4 le_read_int_2@Base 1.12.4 le_read_int_4@Base 1.12.4 @@ -173,6 +345,9 @@ le_write_int_4@Base 1.12.4 le_write_int_8@Base 1.12.4 log2_data@Base 1.12.4 + ltf8_decode@Base 1.13.1 + ltf8_get@Base 1.13.1 + ltf8_put@Base 1.13.1 memgunzip@Base 1.12.4 memgzip@Base 1.12.4 mfascii@Base 1.12.4 @@ -209,6 +384,7 @@ mfwrite_reading@Base 1.12.4 mfwrite_scf@Base 1.12.4 mfwrite_ztr@Base 1.12.4 + mkdir_prefix@Base 1.13.1 mrewind@Base 1.12.4 mstderr@Base 1.12.4 mstdin@Base 1.12.4 @@ -227,6 +403,7 @@ open_trace_mfile@Base 1.12.4 opos2str@Base 1.12.4 pack_trace_suffix@Base 1.12.4 + paranoid_fclose@Base 1.13.1 partial_decode_ztr@Base 1.12.4 pool_alloc@Base 1.12.4 pool_create@Base 1.12.4 @@ -267,11 +444,32 @@ recorrelate1@Base 1.12.4 recorrelate2@Base 1.12.4 recorrelate4@Base 1.12.4 + refs2id@Base 1.13.1 remove_extension@Base 1.12.4 remove_file@Base 1.12.4 restore_codes@Base 1.12.4 restore_codes_single@Base 1.12.4 rle@Base 1.12.4 + sam_hdr_PG_ID@Base 1.13.1 + sam_hdr_add@Base 1.13.1 + sam_hdr_add_PG@Base 1.13.1 + sam_hdr_add_lines@Base 1.13.1 + sam_hdr_dump@Base 1.13.1 + sam_hdr_dup@Base 1.13.1 + sam_hdr_find@Base 1.13.1 + sam_hdr_find_key@Base 1.13.1 + sam_hdr_find_line@Base 1.13.1 + sam_hdr_find_rg@Base 1.13.1 + sam_hdr_free@Base 1.13.1 + sam_hdr_length@Base 1.13.1 + sam_hdr_link_pg@Base 1.13.1 + sam_hdr_name2ref@Base 1.13.1 + sam_hdr_new@Base 1.13.1 + sam_hdr_parse@Base 1.13.1 + sam_hdr_rebuild@Base 1.13.1 + sam_hdr_str@Base 1.13.1 + sam_hdr_update@Base 1.13.1 + sam_hdr_vadd@Base 1.13.1 scf2read@Base 1.12.4 scf_allocate@Base 1.12.4 scf_deallocate@Base 1.12.4 @@ -279,6 +477,17 @@ scf_delta_samples2@Base 1.12.4 scf_version_float2str@Base 1.12.4 scf_version_str2float@Base 1.12.4 + scram_close@Base 1.13.1 + scram_get_header@Base 1.13.1 + scram_get_refs@Base 1.13.1 + scram_get_seq@Base 1.13.1 + scram_next_seq@Base 1.13.1 + scram_open@Base 1.13.1 + scram_put_seq@Base 1.13.1 + scram_set_header@Base 1.13.1 + scram_set_option@Base 1.13.1 + scram_set_refs@Base 1.13.1 + scram_write_header@Base 1.13.1 set_compression_method@Base 1.12.4 set_scf_version@Base 1.12.4 shrink_16to8@Base 1.12.4 @@ -330,6 +539,13 @@ str2opos@Base 1.12.4 str_tolower@Base 1.12.4 str_toupper@Base 1.12.4 + string_alloc@Base 1.13.1 + string_dup@Base 1.13.1 + string_ndup@Base 1.13.1 + string_pool_create@Base 1.13.1 + string_pool_destroy@Base 1.13.1 + stringify_argv@Base 1.13.1 + tokenise_search_path@Base 1.13.1 trace_type_int2str@Base 1.12.4 trace_type_str2int@Base 1.12.4 trace_type_str@Base 1.12.4 @@ -368,6 +584,14 @@ xrealloc@Base 1.12.4 xrle2@Base 1.12.4 xrle@Base 1.12.4 + zfclose@Base 1.13.1 + zfeof@Base 1.13.1 + zfgets@Base 1.13.1 + zfopen@Base 1.13.1 + zfpeek@Base 1.13.1 + zfputs@Base 1.13.1 + zfseeko@Base 1.13.1 + zftello@Base 1.13.1 zlib_dehuff@Base 1.12.4 zlib_huff@Base 1.12.4 ztr2read@Base 1.12.4 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
