The following commit has been merged in the master branch:
commit 3ab0b461ed37c089980799d4e4405f61346676f2
Author: Olivier Sallou <[email protected]>
Date: Tue Jul 9 09:28:52 2013 +0200
add possibility to specify java options in command line
diff --git a/debian/bin/picard-tools b/debian/bin/picard-tools
index e892287..867a469 100755
--- a/debian/bin/picard-tools
+++ b/debian/bin/picard-tools
@@ -62,4 +62,4 @@ EOF
esac
p=/usr/share/java
-exec java -XX:MaxPermSize=256m -cp
$p/jbzip2.jar:$p/picard.jar:$p/sam.jar:$p/cofoja.jar:$p/commons-jexl2.jar $main
"$@"
+exec java $JAVA_OPTIONS -XX:MaxPermSize=256m -cp
$p/jbzip2.jar:$p/picard.jar:$p/sam.jar:$p/cofoja.jar:$p/commons-jexl2.jar $main
"$@"
diff --git a/debian/changelog b/debian/changelog
index 9e56d57..af09e32 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+picard-tools (1.90-3) unstable; urgency=low
+
+ * Add possibility to specify JAVA options (Closes: #705681),
+ with JAVA_OPTIONS env variable.
+
+ -- Olivier Sallou <[email protected]> Tue, 09 Jul 2013 09:20:07 +0200
+
picard-tools (1.90-2) unstable; urgency=low
* Load in unstable, all deps are available.
--
manipulate SAM and BAM files
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