Author: ucko Date: 2013-09-05 03:06:01 +0000 (Thu, 05 Sep 2013) New Revision: 14592
Added: trunk/packages/mothur/tags/1.31.2+dfsg-2/ trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/changelog trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/patches/makefile.patch Removed: trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/changelog trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/patches/makefile.patch Log: [svn-buildpackage] Tagging mothur 1.31.2+dfsg-2 Deleted: trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/changelog =================================================================== --- trunk/packages/mothur/trunk/debian/changelog 2013-09-04 13:26:42 UTC (rev 14588) +++ trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/changelog 2013-09-05 03:06:01 UTC (rev 14592) @@ -1,177 +0,0 @@ -mothur (1.31.2+dfsg-1) unstable; urgency=low - - * New upstream version - * debian/watch: use dversionmangle to properly detect new upstream - versions - * debian/copyright: Add Files-Excluded to document what was removed from - original source - * debian/rules: Use enhanced uscan - * debian/control: - - cme fix dpkg-control - - debhelper 9 - - use anonscm for Vcs fields - * debian/patches/uchime_hardening.patch: Hardening for uchime - * debian/uchime.1 - * debian/patches/spelling.patch: Some spelling corrections - - -- Andreas Tille <[email protected]> Tue, 30 Jul 2013 14:32:44 +0200 - -mothur (1.27.0+repack-precise1) precise; urgency=low - - * Remove -march=native from makefile as this makes the result - depend on the build machine - so a package built on a Core3 - CPU won't work on a Xeon. - - -- Tim Booth <[email protected]> Fri, 12 Oct 2012 11:41:04 +0100 - -mothur (1.27.0+repack-precise2) precise; urgency=low - - * New minor release from upstream - * Build MPI version alongside regular version - * ...but only for 64-bit - - -- Tim Booth <[email protected]> Wed, 10 Oct 2012 11:20:43 +0100 - -mothur (1.25.0~repack-lucid3) lucid; urgency=low - - * Removed dependency on catchall - this belongs in the - bio-linux-mothur package. Not sure what I was thinking there. - - -- Tim Booth <[email protected]> Mon, 14 May 2012 10:57:22 +0100 - -mothur (1.25.0~repack-lucid2) lucid; urgency=low - - * Fix 32-bit build and add uchime (which should be packaged - separately, but I've no time for that just now) - - -- Tim Booth <[email protected]> Thu, 10 May 2012 10:43:04 +0100 - -mothur (1.25.0~repack-lucid1) lucid; urgency=low - - * Rebuild for Lucid with repack fudge again - - -- Tim Booth <[email protected]> Wed, 09 May 2012 11:20:15 +0100 - -mothur (1.25.0-1) UNRELEASED; urgency=low - - * New upstream release - * debian/upstream: more complete authors information in proper BibTeX - format - - -- Andreas Tille <[email protected]> Tue, 08 May 2012 18:00:19 +0200 - -mothur (1.24.1-1) unstable; urgency=low - - * New upstream version - - adpated patches - - droped debian/patches/kfreebsd.patch because it was applied - upstream - - -- Andreas Tille <[email protected]> Tue, 03 Apr 2012 09:05:44 +0200 - -mothur (1.23.1-1) unstable; urgency=low - - * New upstream version (including updating patches) - * debian/upstream: - - fixed typo: s/TITILE/TITLE/ - - Moved DOI+PMID to references - * debian/control: - - Standards-Version: 3.9.3 (no changes needed) - - Build-Depends: gfortran - * debian/get-orig-source: - - be not that verbose - - more reproducible creation of tarball - - Strip some useless files from tarball (.*; *.o) - * debhelper 9 (control+compat) - * debian/copyright: DEP5 changes and verified using - cme fix dpkg-copyright - - -- Andreas Tille <[email protected]> Thu, 08 Mar 2012 14:52:47 +0100 - -mothur (1.22.2-2) unstable; urgency=low - - * debian/patches/kfreebsd.patch: Enable build on BSD machines - (thanks to Christoph Egger <[email protected]> and Robert - Millan <[email protected]>) - Closes: #650683 - * debian/control: Fixed Vcs fields - * debian/{control,rules}: drop explicite quilt dependency which is - just given by source format 3.0 (quilt) - - -- Andreas Tille <[email protected]> Tue, 06 Dec 2011 17:14:49 +0100 - -mothur (1.22.2~repack-ubuntu1) lucid; urgency=low - - * Backport for Ubuntu - * Need to fudge version as upstream was repacked by Andreas' - script - - -- Tim Booth <[email protected]> Mon, 05 Dec 2011 17:37:16 +0000 - -mothur (1.22.2-1) unstable; urgency=low - - * New upstream version - * debian/patches/drop_sse_option.patch: Fix for FTBFS: unrecognized - command line option '-msse2' (Thanks for the patch to - Nobuhiro Iwamatsu <[email protected]>) - Closes: #648255 - - -- Andreas Tille <[email protected]> Thu, 10 Nov 2011 08:38:32 +0100 - -mothur (1.22.1-1) unstable; urgency=low - - [ Thorsten Alteholz ] - * new upstream version - * adapted patches to this version - * debian/control: no dependency on quilt needed - * debian/control + debian/compat: dh version set to >= 8 - - [ Andreas Tille ] - * debian/control: readd quilt dependency because build fails otherwise - * debian/copyright: fix spelling error - - -- Andreas Tille <[email protected]> Mon, 07 Nov 2011 11:14:17 +0100 - -mothur (1.18.1-1) unstable; urgency=low - - * New upstream version (adapted patches to new location of - makefile) - * debian/rules: No need to specify SOURCEDIR any more - * Added Tim Booth <[email protected]> as Uploader, - removed Sri Girish Srinivasa Murthy <[email protected]> - from uploaders - * Standards-Version: 3.9.2 (no changes needed) - - -- Andreas Tille <[email protected]> Tue, 26 Apr 2011 19:58:45 +0200 - -mothur (1.18.0-1ubuntu1) lucid; urgency=low - - * Rebuild for PPA - * Source now comes in subdirectory Mothur.source - modify rules file - to handle this - - -- Tim Booth <[email protected]> Thu, 14 Apr 2011 14:50:24 +0100 - -mothur (1.17.3-1) unstable; urgency=low - - * New upstream version, which specifically solves some copyright - questions of ftpmaster (Charles, thanks for reviewing - debian/copyright) - Closes: #589675 - * Updated patches - * debian/copyright: - Clarified license issues - - -- Andreas Tille <[email protected]> Wed, 30 Mar 2011 09:01:52 +0200 - -mothur (1.15.0-1ubuntu1) lucid; urgency=low - - * Rebuild for upload to PPA, license or not. - - -- Tim Booth <[email protected]> Sun, 30 Jan 2011 12:14:18 +0000 - -mothur (1.15.0-1) unstable; urgency=low - - * Initial release (Closes: #589675) - - -- Andreas Tille <[email protected]> Wed, 02 Feb 2011 08:59:45 +0100 Copied: trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/changelog (from rev 14591, trunk/packages/mothur/trunk/debian/changelog) =================================================================== --- trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/changelog (rev 0) +++ trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/changelog 2013-09-05 03:06:01 UTC (rev 14592) @@ -0,0 +1,185 @@ +mothur (1.31.2+dfsg-2) unstable; urgency=low + + * Team upload. + * debian/patches/makefile.patch: Leave off -m64, which ia64 doesn't + support and other 64-bit architectures don't need. (Closes: #721770.) + + -- Aaron M. Ucko <[email protected]> Wed, 04 Sep 2013 22:37:31 -0400 + +mothur (1.31.2+dfsg-1) unstable; urgency=low + + * New upstream version + * debian/watch: use dversionmangle to properly detect new upstream + versions + * debian/copyright: Add Files-Excluded to document what was removed from + original source + * debian/rules: Use enhanced uscan + * debian/control: + - cme fix dpkg-control + - debhelper 9 + - use anonscm for Vcs fields + * debian/patches/uchime_hardening.patch: Hardening for uchime + * debian/uchime.1 + * debian/patches/spelling.patch: Some spelling corrections + + -- Andreas Tille <[email protected]> Tue, 30 Jul 2013 14:32:44 +0200 + +mothur (1.27.0+repack-precise1) precise; urgency=low + + * Remove -march=native from makefile as this makes the result + depend on the build machine - so a package built on a Core3 + CPU won't work on a Xeon. + + -- Tim Booth <[email protected]> Fri, 12 Oct 2012 11:41:04 +0100 + +mothur (1.27.0+repack-precise2) precise; urgency=low + + * New minor release from upstream + * Build MPI version alongside regular version + * ...but only for 64-bit + + -- Tim Booth <[email protected]> Wed, 10 Oct 2012 11:20:43 +0100 + +mothur (1.25.0~repack-lucid3) lucid; urgency=low + + * Removed dependency on catchall - this belongs in the + bio-linux-mothur package. Not sure what I was thinking there. + + -- Tim Booth <[email protected]> Mon, 14 May 2012 10:57:22 +0100 + +mothur (1.25.0~repack-lucid2) lucid; urgency=low + + * Fix 32-bit build and add uchime (which should be packaged + separately, but I've no time for that just now) + + -- Tim Booth <[email protected]> Thu, 10 May 2012 10:43:04 +0100 + +mothur (1.25.0~repack-lucid1) lucid; urgency=low + + * Rebuild for Lucid with repack fudge again + + -- Tim Booth <[email protected]> Wed, 09 May 2012 11:20:15 +0100 + +mothur (1.25.0-1) UNRELEASED; urgency=low + + * New upstream release + * debian/upstream: more complete authors information in proper BibTeX + format + + -- Andreas Tille <[email protected]> Tue, 08 May 2012 18:00:19 +0200 + +mothur (1.24.1-1) unstable; urgency=low + + * New upstream version + - adpated patches + - droped debian/patches/kfreebsd.patch because it was applied + upstream + + -- Andreas Tille <[email protected]> Tue, 03 Apr 2012 09:05:44 +0200 + +mothur (1.23.1-1) unstable; urgency=low + + * New upstream version (including updating patches) + * debian/upstream: + - fixed typo: s/TITILE/TITLE/ + - Moved DOI+PMID to references + * debian/control: + - Standards-Version: 3.9.3 (no changes needed) + - Build-Depends: gfortran + * debian/get-orig-source: + - be not that verbose + - more reproducible creation of tarball + - Strip some useless files from tarball (.*; *.o) + * debhelper 9 (control+compat) + * debian/copyright: DEP5 changes and verified using + cme fix dpkg-copyright + + -- Andreas Tille <[email protected]> Thu, 08 Mar 2012 14:52:47 +0100 + +mothur (1.22.2-2) unstable; urgency=low + + * debian/patches/kfreebsd.patch: Enable build on BSD machines + (thanks to Christoph Egger <[email protected]> and Robert + Millan <[email protected]>) + Closes: #650683 + * debian/control: Fixed Vcs fields + * debian/{control,rules}: drop explicite quilt dependency which is + just given by source format 3.0 (quilt) + + -- Andreas Tille <[email protected]> Tue, 06 Dec 2011 17:14:49 +0100 + +mothur (1.22.2~repack-ubuntu1) lucid; urgency=low + + * Backport for Ubuntu + * Need to fudge version as upstream was repacked by Andreas' + script + + -- Tim Booth <[email protected]> Mon, 05 Dec 2011 17:37:16 +0000 + +mothur (1.22.2-1) unstable; urgency=low + + * New upstream version + * debian/patches/drop_sse_option.patch: Fix for FTBFS: unrecognized + command line option '-msse2' (Thanks for the patch to + Nobuhiro Iwamatsu <[email protected]>) + Closes: #648255 + + -- Andreas Tille <[email protected]> Thu, 10 Nov 2011 08:38:32 +0100 + +mothur (1.22.1-1) unstable; urgency=low + + [ Thorsten Alteholz ] + * new upstream version + * adapted patches to this version + * debian/control: no dependency on quilt needed + * debian/control + debian/compat: dh version set to >= 8 + + [ Andreas Tille ] + * debian/control: readd quilt dependency because build fails otherwise + * debian/copyright: fix spelling error + + -- Andreas Tille <[email protected]> Mon, 07 Nov 2011 11:14:17 +0100 + +mothur (1.18.1-1) unstable; urgency=low + + * New upstream version (adapted patches to new location of + makefile) + * debian/rules: No need to specify SOURCEDIR any more + * Added Tim Booth <[email protected]> as Uploader, + removed Sri Girish Srinivasa Murthy <[email protected]> + from uploaders + * Standards-Version: 3.9.2 (no changes needed) + + -- Andreas Tille <[email protected]> Tue, 26 Apr 2011 19:58:45 +0200 + +mothur (1.18.0-1ubuntu1) lucid; urgency=low + + * Rebuild for PPA + * Source now comes in subdirectory Mothur.source - modify rules file + to handle this + + -- Tim Booth <[email protected]> Thu, 14 Apr 2011 14:50:24 +0100 + +mothur (1.17.3-1) unstable; urgency=low + + * New upstream version, which specifically solves some copyright + questions of ftpmaster (Charles, thanks for reviewing + debian/copyright) + Closes: #589675 + * Updated patches + * debian/copyright: + Clarified license issues + + -- Andreas Tille <[email protected]> Wed, 30 Mar 2011 09:01:52 +0200 + +mothur (1.15.0-1ubuntu1) lucid; urgency=low + + * Rebuild for upload to PPA, license or not. + + -- Tim Booth <[email protected]> Sun, 30 Jan 2011 12:14:18 +0000 + +mothur (1.15.0-1) unstable; urgency=low + + * Initial release (Closes: #589675) + + -- Andreas Tille <[email protected]> Wed, 02 Feb 2011 08:59:45 +0100 Deleted: trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/patches/makefile.patch =================================================================== --- trunk/packages/mothur/trunk/debian/patches/makefile.patch 2013-09-04 13:26:42 UTC (rev 14588) +++ trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/patches/makefile.patch 2013-09-05 03:06:01 UTC (rev 14592) @@ -1,39 +0,0 @@ -Author: Steffen Moeller <[email protected]>, Tim Booth <[email protected]> -Purpose: Comment MAC specific option - Set -m64 but not -march=native for 64-bit build ---- a/makefile -+++ b/makefile -@@ -21,14 +21,15 @@ FORTAN_COMPILER = gfortran - FORTRAN_FLAGS = - - # Optimize to level 3: --CXXFLAGS += -O3 -+# Nope, let debuild set this. -+# CXXFLAGS += -O3 - - ifeq ($(strip $(64BIT_VERSION)),yes) - #if you are using centos uncomment the following lines - #CXX = g++44 - - #if you are a mac user use the following line -- TARGET_ARCH += -arch x86_64 -+ #TARGET_ARCH += -arch x86_64 - - #if you using cygwin to build Windows the following line - #CXX = x86_64-w64-mingw32-g++ -@@ -38,6 +39,10 @@ ifeq ($(strip $(64BIT_VERSION)),yes) - - #if you are a linux user use the following line - #CXXFLAGS += -mtune=native -march=native -m64 -+ # But not if you are trying to make a generic build for -+ # packaging, because your binary will end up being specific -+ # to your processor. -+ CXXFLAGS += -m64 - - CXXFLAGS += -DBIT_VERSION - FORTRAN_FLAGS = -m64 -@@ -120,4 +125,3 @@ install : mothur - clean : - @rm -f $(OBJECTS) - @rm -f uchime -- Copied: trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/patches/makefile.patch (from rev 14590, trunk/packages/mothur/trunk/debian/patches/makefile.patch) =================================================================== --- trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/patches/makefile.patch (rev 0) +++ trunk/packages/mothur/tags/1.31.2+dfsg-2/debian/patches/makefile.patch 2013-09-05 03:06:01 UTC (rev 14592) @@ -0,0 +1,42 @@ +Author: Steffen Moeller <[email protected]>, Tim Booth <[email protected]> +Purpose: Comment MAC specific option + Don't bother with any compilation flags, as the defaults are already sane + on all architectures (and trying to set -m64 explicitly fails on ia64). +--- a/makefile ++++ b/makefile +@@ -21,14 +21,15 @@ FORTAN_COMPILER = gfortran + FORTRAN_FLAGS = + + # Optimize to level 3: +-CXXFLAGS += -O3 ++# Nope, let debuild set this. ++# CXXFLAGS += -O3 + + ifeq ($(strip $(64BIT_VERSION)),yes) + #if you are using centos uncomment the following lines + #CXX = g++44 + + #if you are a mac user use the following line +- TARGET_ARCH += -arch x86_64 ++ #TARGET_ARCH += -arch x86_64 + + #if you using cygwin to build Windows the following line + #CXX = x86_64-w64-mingw32-g++ +@@ -38,9 +39,11 @@ ifeq ($(strip $(64BIT_VERSION)),yes) + + #if you are a linux user use the following line + #CXXFLAGS += -mtune=native -march=native -m64 ++ # But not if you are trying to make a generic build for ++ # packaging, because your binary will end up being specific ++ # to your processor. + + CXXFLAGS += -DBIT_VERSION +- FORTRAN_FLAGS = -m64 + endif + + +@@ -120,4 +123,3 @@ install : mothur + clean : + @rm -f $(OBJECTS) + @rm -f uchime +- _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
