Author: plessy Date: 2013-09-23 02:27:26 +0000 (Mon, 23 Sep 2013) New Revision: 14757
Added: trunk/packages/infernal/tags/1.1~rc4-2/ trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog trunk/packages/infernal/tags/1.1~rc4-2/debian/control Removed: trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog trunk/packages/infernal/tags/1.1~rc4-2/debian/control Log: [svn-buildpackage] Tagging infernal 1.1~rc4-2 Deleted: trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog =================================================================== --- trunk/packages/infernal/trunk/debian/changelog 2013-09-23 00:37:18 UTC (rev 14754) +++ trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog 2013-09-23 02:27:26 UTC (rev 14757) @@ -1,125 +0,0 @@ -infernal (1.1~rc4-1.1) UNRELEASED; urgency=low - - * Team upload. - * debian/control: removed myself from Uploaders. - - -- Charles Plessy <[email protected]> Mon, 23 Sep 2013 09:36:44 +0900 - -infernal (1.1~rc4-1) unstable; urgency=low - - * New upstream source - * debian/source/format: 3.0 (quilt) - * debian/control: - - cme fix dpkg-control - - debhelper 9 - - do not Build-Depend: quilt since source format implies this - - The package builds only on architectures with SSE instructions. - Quoting from build log on armel: - configure: WARNING: Infernal 1.1 requires VMX or SSE capability for - parallel instructions. - configure: error: It appears your platform has neither and will not - support Infernal. - So all non i386/amd64 architectures were excluded - Closes: #718742 - - use anonscm in Vcs fields - * debian/rules: - - remove redundant setting for flags which is handled by debhelper 9 - automatically - - use xz compression - * debian/copyright: DEP5 - - -- Andreas Tille <[email protected]> Mon, 05 Aug 2013 12:06:12 +0200 - -infernal (1.1~rc2-1) unstable; urgency=low - - * New upstream version - aiming to support RNAWorld BOINC project, - with many thanks and regards to Yoyo! - - cmscore no longer available - * Bumped policy to 3.9.4 (no changes needed) - - introduced hardening, with it build dep on - dpkg-dev (>= 1.16.1~) - - -- Steffen Moeller <[email protected]> Wed, 01 May 2013 20:24:17 +0200 - -infernal (1.0.2-3) UNRELEASED; urgency=low - - [ Steffen Moeller ] - * Extra fixed for lintian cleanliness (Steffen) - - [ Andreas Tille ] - * debian/upstream: - - do not specify DOI twice - - Moved PMID to references - * debian/control: - - Fixed Vcs-Svn field - - Standards-Version: 3.9.3 (no changes needed) - - -- Andreas Tille <[email protected]> Thu, 08 Mar 2012 11:44:54 +0100 - -infernal (1.0.2-2) unstable; urgency=low - - * Series of mall fixes (Closes: #643407). - * source/format 3.0 - * Policy to 3.9.2 - * added infernal-dbg - * corrected upstream's email address - - -- Steffen Moeller <[email protected]> Tue, 27 Sep 2011 15:48:27 +0200 - -infernal (1.0.2-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 11:15:34 +0100 - -infernal (1.0-2) unstable; urgency=low - - * Switch to CDBS to benefit from automagical config.{sub,guess} - update (debian/rules). Closes: #550253. - * debian/control: - - Depend on cdbs, downgraded requirement on debhelper from 7.1 to 7. - - Transferred bibliographic information from the package description - to debian/upstream-metadata.yaml. - - Clarified the short description of the documentation package. - * Removed debian/infernal.dirs, not needed. - * Edited README.source, removing mention that infernal is in contrib. - * debian/copyright points at the version 3 of the GPL. - - -- Charles Plessy <[email protected]> Sat, 10 Oct 2009 11:22:35 +0900 - -infernal (1.0-1) unstable; urgency=low - - [ Charles Plessy ] - * Updated my email address. - - [ Andreas Tille ] - * New upstream version - * debian/control: - - Standards-Version: 3.8.3 (no changes needed) - - Added myself to uploaders - - s/Debian-Med/Debian Med/ - - Build-Depends: debhelper (>= 7.1) autotools-dev - - Package: infernal-doc - * debian/rules rewritten to make use of short dh - * debian/copyright: - - added myself to Copyright holders of debian/* - - squid is not part of the upstream tarball anymore so this - paragraph was deleted - - files/Userguide.pdf: Copied comment about PDF = source from - README.Debian - * debian/infernal-doc.doc-base - * debian/infernal.install: install src/{trcyk,truncyk_check} to - /usr/bin - - * TODO: Convince upstream to release libeazel which is also used in - hmmer as a separate library instead of copying the code into - different projects - - -- Andreas Tille <[email protected]> Fri, 25 Sep 2009 15:17:22 +0200 - -infernal (0.81-1) experimental; urgency=low - - * Initial release (Closes: #441840) - - -- Steffen Moeller <[email protected]> Mon, 10 Sep 2007 23:15:37 +0200 - Copied: trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog (from rev 14756, trunk/packages/infernal/trunk/debian/changelog) =================================================================== --- trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog (rev 0) +++ trunk/packages/infernal/tags/1.1~rc4-2/debian/changelog 2013-09-23 02:27:26 UTC (rev 14757) @@ -0,0 +1,126 @@ +infernal (1.1~rc4-2) unstable; urgency=low + + * Team upload. + * Build-depends on libperl4-corelibs-perl (Closes: #724119). + * debian/control: removed myself from Uploaders. + + -- Charles Plessy <[email protected]> Mon, 23 Sep 2013 10:57:17 +0900 + +infernal (1.1~rc4-1) unstable; urgency=low + + * New upstream source + * debian/source/format: 3.0 (quilt) + * debian/control: + - cme fix dpkg-control + - debhelper 9 + - do not Build-Depend: quilt since source format implies this + - The package builds only on architectures with SSE instructions. + Quoting from build log on armel: + configure: WARNING: Infernal 1.1 requires VMX or SSE capability for + parallel instructions. + configure: error: It appears your platform has neither and will not + support Infernal. + So all non i386/amd64 architectures were excluded + Closes: #718742 + - use anonscm in Vcs fields + * debian/rules: + - remove redundant setting for flags which is handled by debhelper 9 + automatically + - use xz compression + * debian/copyright: DEP5 + + -- Andreas Tille <[email protected]> Mon, 05 Aug 2013 12:06:12 +0200 + +infernal (1.1~rc2-1) unstable; urgency=low + + * New upstream version - aiming to support RNAWorld BOINC project, + with many thanks and regards to Yoyo! + - cmscore no longer available + * Bumped policy to 3.9.4 (no changes needed) + - introduced hardening, with it build dep on + dpkg-dev (>= 1.16.1~) + + -- Steffen Moeller <[email protected]> Wed, 01 May 2013 20:24:17 +0200 + +infernal (1.0.2-3) UNRELEASED; urgency=low + + [ Steffen Moeller ] + * Extra fixed for lintian cleanliness (Steffen) + + [ Andreas Tille ] + * debian/upstream: + - do not specify DOI twice + - Moved PMID to references + * debian/control: + - Fixed Vcs-Svn field + - Standards-Version: 3.9.3 (no changes needed) + + -- Andreas Tille <[email protected]> Thu, 08 Mar 2012 11:44:54 +0100 + +infernal (1.0.2-2) unstable; urgency=low + + * Series of mall fixes (Closes: #643407). + * source/format 3.0 + * Policy to 3.9.2 + * added infernal-dbg + * corrected upstream's email address + + -- Steffen Moeller <[email protected]> Tue, 27 Sep 2011 15:48:27 +0200 + +infernal (1.0.2-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 11:15:34 +0100 + +infernal (1.0-2) unstable; urgency=low + + * Switch to CDBS to benefit from automagical config.{sub,guess} + update (debian/rules). Closes: #550253. + * debian/control: + - Depend on cdbs, downgraded requirement on debhelper from 7.1 to 7. + - Transferred bibliographic information from the package description + to debian/upstream-metadata.yaml. + - Clarified the short description of the documentation package. + * Removed debian/infernal.dirs, not needed. + * Edited README.source, removing mention that infernal is in contrib. + * debian/copyright points at the version 3 of the GPL. + + -- Charles Plessy <[email protected]> Sat, 10 Oct 2009 11:22:35 +0900 + +infernal (1.0-1) unstable; urgency=low + + [ Charles Plessy ] + * Updated my email address. + + [ Andreas Tille ] + * New upstream version + * debian/control: + - Standards-Version: 3.8.3 (no changes needed) + - Added myself to uploaders + - s/Debian-Med/Debian Med/ + - Build-Depends: debhelper (>= 7.1) autotools-dev + - Package: infernal-doc + * debian/rules rewritten to make use of short dh + * debian/copyright: + - added myself to Copyright holders of debian/* + - squid is not part of the upstream tarball anymore so this + paragraph was deleted + - files/Userguide.pdf: Copied comment about PDF = source from + README.Debian + * debian/infernal-doc.doc-base + * debian/infernal.install: install src/{trcyk,truncyk_check} to + /usr/bin + + * TODO: Convince upstream to release libeazel which is also used in + hmmer as a separate library instead of copying the code into + different projects + + -- Andreas Tille <[email protected]> Fri, 25 Sep 2009 15:17:22 +0200 + +infernal (0.81-1) experimental; urgency=low + + * Initial release (Closes: #441840) + + -- Steffen Moeller <[email protected]> Mon, 10 Sep 2007 23:15:37 +0200 + Deleted: trunk/packages/infernal/tags/1.1~rc4-2/debian/control =================================================================== --- trunk/packages/infernal/trunk/debian/control 2013-09-23 00:37:18 UTC (rev 14754) +++ trunk/packages/infernal/tags/1.1~rc4-2/debian/control 2013-09-23 02:27:26 UTC (rev 14757) @@ -1,60 +0,0 @@ -Source: infernal -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Steffen Moeller <[email protected]>, - Andreas Tille <[email protected]> -Section: science -Priority: optional -Build-Depends: dpkg-dev (>= 1.16.1~), - debhelper (>= 9), - autotools-dev -Standards-Version: 3.9.4 -Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/infernal/trunk/ -Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/infernal/trunk/ -Homepage: http://infernal.janelia.org/ - -Package: infernal -Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386 -Depends: ${shlibs:Depends}, - ${misc:Depends} -Description: inference of RNA secondary structural alignments - Infernal ("INFERence of RNA ALignment") searches DNA sequence - databases for RNA structure and sequence similarities. It provides an - implementation of a special variant of profile stochastic context-free - grammars called covariance models (CMs). A CM is like a sequence - profile, but it scores a combination of sequence consensus and RNA - secondary structure consensus, so in many cases, it is more capable of - identifying RNA homologs that conserve their secondary structure more - than their primary sequence. - . - The tool is an integral component of the Rfam database. - -Package: infernal-doc -Architecture: all -Section: doc -Depends: ${shlibs:Depends}, - ${misc:Depends} -Description: inference of RNA secondary structural alignments – documentation - Infernal ("INFERence of RNA ALignment") searches DNA sequence - databases for RNA structure and sequence similarities. It provides an - implementation of a special case of profile stochastic context-free - grammars called covariance models (CMs). A CM is like a sequence - profile, but it scores a combination of sequence consensus and RNA - secondary structure consensus, so in many cases, it is more capable of - identifying RNA homologs that conserve their secondary structure more - than their primary sequence. - . - This package provides the documentation which is shipped with the - code of infernal. - -Package: infernal-dbg -Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386 -Section: debug -Priority: extra -Depends: ${misc:Depends}, - infernal (= ${binary:Version}) -Description: debug information for infernal - This package contains extra information to help the debugging of the - infernal suite. The package is auto-generated. You may be asked - by the upstream developer to install it to help the identification - of a technical problem. - Copied: trunk/packages/infernal/tags/1.1~rc4-2/debian/control (from rev 14755, trunk/packages/infernal/trunk/debian/control) =================================================================== --- trunk/packages/infernal/tags/1.1~rc4-2/debian/control (rev 0) +++ trunk/packages/infernal/tags/1.1~rc4-2/debian/control 2013-09-23 02:27:26 UTC (rev 14757) @@ -0,0 +1,61 @@ +Source: infernal +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Steffen Moeller <[email protected]>, + Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: dpkg-dev (>= 1.16.1~), + debhelper (>= 9), + libperl4-corelibs-perl, + autotools-dev +Standards-Version: 3.9.4 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/infernal/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/infernal/trunk/ +Homepage: http://infernal.janelia.org/ + +Package: infernal +Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386 +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: inference of RNA secondary structural alignments + Infernal ("INFERence of RNA ALignment") searches DNA sequence + databases for RNA structure and sequence similarities. It provides an + implementation of a special variant of profile stochastic context-free + grammars called covariance models (CMs). A CM is like a sequence + profile, but it scores a combination of sequence consensus and RNA + secondary structure consensus, so in many cases, it is more capable of + identifying RNA homologs that conserve their secondary structure more + than their primary sequence. + . + The tool is an integral component of the Rfam database. + +Package: infernal-doc +Architecture: all +Section: doc +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: inference of RNA secondary structural alignments – documentation + Infernal ("INFERence of RNA ALignment") searches DNA sequence + databases for RNA structure and sequence similarities. It provides an + implementation of a special case of profile stochastic context-free + grammars called covariance models (CMs). A CM is like a sequence + profile, but it scores a combination of sequence consensus and RNA + secondary structure consensus, so in many cases, it is more capable of + identifying RNA homologs that conserve their secondary structure more + than their primary sequence. + . + This package provides the documentation which is shipped with the + code of infernal. + +Package: infernal-dbg +Architecture: i386 amd64 kfreebsd-i386 kfreebsd-amd64 hurd-i386 +Section: debug +Priority: extra +Depends: ${misc:Depends}, + infernal (= ${binary:Version}) +Description: debug information for infernal + This package contains extra information to help the debugging of the + infernal suite. The package is auto-generated. You may be asked + by the upstream developer to install it to help the identification + of a technical problem. + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
