Author: lkajan Date: 2013-10-01 19:20:09 +0000 (Tue, 01 Oct 2013) New Revision: 14782
Added: trunk/packages/rostlab/rate4site/trunk/debian/patches/ trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am trunk/packages/rostlab/rate4site/trunk/debian/patches/series trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install Modified: trunk/packages/rostlab/rate4site/trunk/debian/ trunk/packages/rostlab/rate4site/trunk/debian/control trunk/packages/rostlab/rate4site/trunk/debian/rules Log: many fixes to Debianization Property changes on: trunk/packages/rostlab/rate4site/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Modified: trunk/packages/rostlab/rate4site/trunk/debian/control =================================================================== --- trunk/packages/rostlab/rate4site/trunk/debian/control 2013-10-01 18:31:51 UTC (rev 14781) +++ trunk/packages/rostlab/rate4site/trunk/debian/control 2013-10-01 19:20:09 UTC (rev 14782) @@ -2,21 +2,35 @@ Section: science Priority: extra Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Guy Yachdav <[email protected]>, Laszlo Kajan <[email protected]> -Build-Depends: debhelper (>= 9.0.0), autotools-dev +Uploaders: Guy Yachdav <[email protected]> +Build-Depends: debhelper (>= 9.0.0), automake, autotools-dev Standards-Version: 3.9.4 Homepage: http://www.tau.ac.il/~itaymay/cp/rate4site.html Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/rostlab/rate4site Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/rostlab/rate4site - Package: rate4site -Architecture: all +Architecture: any Pre-Depends: debconf (>= 0.5) -Description: detection of conserved amino-acid sites +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: detector of conserved amino-acid sites Rate4Site calculates the relative evolutionary rate at each site using a probabilistic-based evolutionary model. This allows taking into account the stochastic process underlying sequence evolution within protein families and the phylogenetic tree of the proteins in the family. The conservation score at a site corresponds to the site's evolutionary rate. + +Package: rate4site-dbg +Architecture: any +Section: debug +Depends: rate4site (= ${binary:Version}), ${misc:Depends} +Description: debugging symbols for rate4site-dbg + Rate4Site calculates the relative evolutionary rate at each site using a + probabilistic-based evolutionary model. + This allows taking into account the stochastic process underlying sequence + evolution within protein families + and the phylogenetic tree of the proteins in the family. + The conservation score at a site corresponds to the site's evolutionary rate. + . + This package provides the detached debug symbols for rate4site. Added: trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am =================================================================== --- trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am (rev 0) +++ trunk/packages/rostlab/rate4site/trunk/debian/patches/Makefile.am 2013-10-01 19:20:09 UTC (rev 14782) @@ -0,0 +1,10 @@ +--- a/src/rate4site/Makefile.am ++++ b/src/rate4site/Makefile.am +@@ -1,5 +1,5 @@ +-rate4sitedir=usr/share/rate4site +-rate4site_doublerepdir=usr/share/rate4site ++rate4sitedir=$(pkgdatadir) ++rate4site_doublerepdir=$(pkgdatadir) + + PROGS=rate4site rate4site_doublerep + Added: trunk/packages/rostlab/rate4site/trunk/debian/patches/series =================================================================== --- trunk/packages/rostlab/rate4site/trunk/debian/patches/series (rev 0) +++ trunk/packages/rostlab/rate4site/trunk/debian/patches/series 2013-10-01 19:20:09 UTC (rev 14782) @@ -0,0 +1,2 @@ +spelling_errors +Makefile.am Added: trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors =================================================================== --- trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors (rev 0) +++ trunk/packages/rostlab/rate4site/trunk/debian/patches/spelling_errors 2013-10-01 19:20:09 UTC (rev 14782) @@ -0,0 +1,11 @@ +--- a/src/phylogeny/numRec.cpp ++++ b/src/phylogeny/numRec.cpp +@@ -134,7 +134,7 @@ + } // end of for (ip = ... + } // end of for (i = 0; i< MaxNumberOfSweeps ; ++i) { + vector<string> err; +- err.push_back("problems in function MyJacobi. more than MaxNumberOfSweeps were necesary."); ++ err.push_back("problems in function MyJacobi. more than MaxNumberOfSweeps were necessary."); + errorMsg::reportError(err); + + return -1; Added: trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install =================================================================== --- trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install (rev 0) +++ trunk/packages/rostlab/rate4site/trunk/debian/rate4site.install 2013-10-01 19:20:09 UTC (rev 14782) @@ -0,0 +1 @@ +usr/bin/rate4site Modified: trunk/packages/rostlab/rate4site/trunk/debian/rules =================================================================== --- trunk/packages/rostlab/rate4site/trunk/debian/rules 2013-10-01 18:31:51 UTC (rev 14781) +++ trunk/packages/rostlab/rate4site/trunk/debian/rules 2013-10-01 19:20:09 UTC (rev 14782) @@ -1,9 +1,18 @@ #!/usr/bin/make -f #export DH_VERBOSE=1 -%: - dh $@ +export CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS) +export CFLAGS:=$(shell dpkg-buildflags --get CFLAGS) +export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) +export LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS) +.PHONY: override_dh_strip +override_dh_strip: + dh_strip --dbg-package=rate4site-dbg + get-orig-source: mkdir -p ../tarballs uscan --verbose --force-download --destdir=../tarballs + +%: + dh $@ --parallel --with autotools_dev _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
