This is an automated email from the git hooks/post-receive script.
plessy pushed a change to branch master
in repository picard-tools.
from fa4a3a6 Upload release 1.100
new ff4fd82 Imported Upstream version 1.101
new 75a5a92 Merge tag 'upstream/1.101'
new 2cdae8e New upstream release with no new copyright nor license
notice.
new c8be686 Conforms with Policy 3.9.5.
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
build.xml | 2 +-
debian/changelog | 7 +
debian/control | 2 +-
debian/copyright | 2 +-
src/java/net/sf/picard/pedigree/PedFile.java | 99 +++++++++++
src/java/net/sf/picard/pedigree/PedTrio.java | 45 +++++
src/java/net/sf/picard/pedigree/Sex.java | 26 +++
src/java/net/sf/picard/util/MathUtil.java | 17 ++
src/java/net/sf/samtools/util/Iso8601Date.java | 2 +-
.../net/sf/samtools/util/RelativeIso8601Date.java | 187 ++++++++++++++++++++
.../org/broadinstitute/variant/vcf/VCFCodec.java | 4 +-
.../broadinstitute/variant/vcf/VCFFileReader.java | 40 +++--
.../sf/samtools/util/RelativeIso8601DateTest.java | 39 ++++
13 files changed, 451 insertions(+), 21 deletions(-)
create mode 100644 src/java/net/sf/picard/pedigree/PedFile.java
create mode 100644 src/java/net/sf/picard/pedigree/PedTrio.java
create mode 100644 src/java/net/sf/picard/pedigree/Sex.java
create mode 100644 src/java/net/sf/samtools/util/RelativeIso8601Date.java
create mode 100644
src/tests/java/net/sf/samtools/util/RelativeIso8601DateTest.java
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