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gert-guest pushed a change to branch master
in repository mia.
from 6fcfeb5 update changelog
new c6b3c7b new package that correct linking and control entries and
add symbols file
new 134f6a8 remove symbols and std-c++11 flag
new 93ea45f Imported Upstream version 2.0.12
new bf8dd83 Merge tag 'upstream/2.0.12'
new 60a043f update changelog for new upload
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 36 +++-
ChangeLog | 25 +++
addons/CMakeLists.txt | 4 +
addons/dicom/CMakeLists.txt | 1 +
addons/dicom/dcm2d.cc | 5 +
addons/dicom/dcm2d.hh | 1 +
addons/dicom/dcm3d.cc | 30 ++-
addons/dicom/dicom4mia.cc | 14 +-
addons/dicom/dicom4mia.hh | 2 +-
{mia/2d/rgbio => addons/jpg}/CMakeLists.txt | 32 ++--
mia/2d/io/jpg.cc => addons/jpg/jpg-gray.cc | 0
mia/2d/rgbio/jpg.cc => addons/jpg/jpg-rgb.cc | 0
.../core/minimizer => addons/nlopt}/CMakeLists.txt | 13 +-
{mia/core/minimizer => addons/nlopt}/nlopt.cc | 2 +-
{mia/core/minimizer => addons/nlopt}/nlopt.hh | 0
{mia/core/minimizer => addons/nlopt}/test_nlopt.cc | 2 +-
addons/openexr/2dimgexr.cc | 7 +-
addons/openexr/2dvfexr.cc | 8 +-
addons/openexr/CMakeLists.txt | 2 +-
{mia/2d/rgbio => addons/png}/CMakeLists.txt | 33 ++--
mia/2d/io/png.cc => addons/png/png-gray.cc | 0
mia/2d/rgbio/png.cc => addons/png/png-rgb.cc | 0
{mia/2d/rgbio => addons/tiff}/CMakeLists.txt | 29 +--
{mia/2d/io => addons/tiff}/tiff.cc | 0
addons/vistaio/CMakeLists.txt | 1 +
addons/vistaio/test_vista4mia.cc | 5 +-
addons/vtk/CMakeLists.txt | 1 +
addons/vtk/vtkimage.cc | 2 +-
addons/vtk/vtkmesh.cc | 3 +-
addons/vtk/vtkvf.cc | 5 +-
config.h.cmake | 14 ++
debian/changelog | 13 +-
debian/control | 7 +-
debian/rules | 3 +-
mia/2d/CMakeLists.txt | 32 ----
mia/2d/SegStar.cc | 3 +-
mia/2d/cost/ngf.hh | 5 +-
mia/2d/creator/circle.cc | 2 +-
mia/2d/fftkernel.cc | 9 +-
mia/2d/filter/aniso.cc | 5 +-
mia/2d/filter/mask.cc | 3 +-
mia/2d/filter/mean.cc | 14 +-
mia/2d/filter/test_mlv.cc | 2 +-
mia/2d/fuzzyClusterSolverCG.cc | 7 +
mia/2d/io/CMakeLists.txt | 17 --
mia/2d/io/bmp.cc | 82 +++++---
mia/2d/model/navier.cc | 5 +-
mia/2d/model/navier.hh | 2 +-
mia/2d/model/naviera.hh | 2 +-
mia/2d/perfusion.cc | 4 +-
mia/2d/rgbio/CMakeLists.txt | 11 --
mia/2d/test_imageio.cc | 5 +-
mia/2d/test_interpol.cc | 13 +-
mia/2d/test_ppmatrix.cc | 11 +-
mia/2d/test_rigidregister.cc | 58 ++----
mia/3d/camera.cc | 7 +-
mia/3d/camera.hh | 2 +-
mia/3d/cost/ngf.hh | 4 -
mia/3d/creator/sphere.cc | 2 +-
mia/3d/fifof/mlv.cc | 3 +-
mia/3d/fifof/mlv.hh | 2 -
mia/3d/fifof/regiongrow.cc | 3 +-
mia/3d/filter/mask.cc | 3 +-
mia/3d/filter/reorient.hh | 1 -
mia/3d/filter/scale.cc | 87 +++++----
mia/3d/filter/test_mlv.cc | 2 +-
mia/3d/fullcost/taggedssd.hh | 2 -
mia/3d/fuzzyClusterSolverCG.cc | 7 +
mia/3d/image.cc | 1 +
mia/3d/io/analyze.cc | 22 ++-
mia/3d/io/inria.cc | 1 +
mia/3d/io/vff.cc | 15 +-
mia/3d/landmark.cc | 6 +-
mia/3d/reg3d/navier.cc | 6 +-
mia/3d/reg3d/naviera.cc | 4 +-
mia/3d/reg3d/navierasse.cc | 2 +-
mia/3d/test_3d.cc | 5 +-
mia/3d/test_imageio.cc | 5 +-
mia/3d/test_ppmatrix.cc | 13 +-
mia/3d/test_rigidregister.cc | 61 ++----
mia/3d/transform.cc | 3 +-
mia/3d/transform/test_spline.cc | 4 +-
mia/core/CMakeLists.txt | 1 -
mia/core/attributes.hh | 10 +-
mia/core/cmdlineparser.cc | 8 +-
mia/core/fftslopeclassifier.cc | 7 +-
mia/core/fifofilter.cxx | 2 +
mia/core/fixedwidthoutput.cc | 2 +-
mia/core/handler.cxx | 6 +-
mia/core/histogram.hh | 2 +-
mia/core/history.cc | 3 +-
mia/core/iohandler.cxx | 13 +-
mia/core/minimizer/CMakeLists.txt | 19 --
mia/core/minimizer/gsl.cc | 9 +
mia/core/noise/gauss.cc | 3 +-
mia/core/parameter.hh | 4 +-
mia/core/plugin_base.cc | 19 ++
mia/core/plugin_base.hh | 15 ++
mia/core/slopestatistics.cc | 14 ++
mia/core/spacialkernel/gauss.cc | 7 +-
mia/core/splineparzenmi.cc | 2 +
mia/core/splineparzenmi.hh | 3 +
mia/core/test_attributes.cc | 14 +-
mia/core/test_cmdlineparser.cc | 25 ++-
mia/core/test_filter.cc | 3 +-
mia/core/test_histogram.cc | 11 ++
mia/core/test_iohandler.cc | 2 +-
mia/core/test_shape.cc | 3 +
mia/core/test_streamredir.cc | 15 +-
mia/core/threadedmsg.cc | 4 +-
mia/core/threadedmsg.hh | 1 -
mia/core/waveletslopeclassifier.cc | 2 +
mia/internal/autotest.hh | 6 +-
mia/internal/main.hh | 48 ++---
mia/internal/plugintester.hh | 6 +-
mia/template/mi.hh | 1 -
mia/template/ssd.hh | 1 -
src/2davgmasked.cc | 7 +-
src/2deval-transformquantity.cc | 10 +-
src/2dimagefilterstack.cc | 6 -
src/{3dimageselect.cc => 2dmultiimageto3d.cc} | 55 +++---
src/2dmyocard-segment.cc | 2 +-
src/2dmyoica-nonrigid2.cc | 8 +-
src/2dmyoperiodic-nonrigid.cc | 17 +-
src/2dsegment-ahmed.cc | 4 +-
src/2dseriescorr.cc | 2 +
src/2dtransformation-to-strain.cc | 2 +-
src/3dprealign-nonrigid.cc | 107 +++++++----
src/3dsegment-ahmed.cc | 4 +-
src/CMakeLists.txt | 1 +
src/fluid2d/main.cc | 2 +-
src/fluid3d/sor_solver.cc | 3 +-
src/fluid3d/vfluid.cc | 4 +
src/raw2image.cc | 8 +-
src/raw2volume.cc | 9 +-
{examples/2d => test}/CMakeLists.txt | 4 +-
test/test_ioplugins.cc | 210 +++++++++++++++++++++
{mia/core => test}/test_minimizer.cc | 29 ++-
138 files changed, 1055 insertions(+), 595 deletions(-)
copy {mia/2d/rgbio => addons/jpg}/CMakeLists.txt (61%)
rename mia/2d/io/jpg.cc => addons/jpg/jpg-gray.cc (100%)
rename mia/2d/rgbio/jpg.cc => addons/jpg/jpg-rgb.cc (100%)
copy {mia/core/minimizer => addons/nlopt}/CMakeLists.txt (81%)
rename {mia/core/minimizer => addons/nlopt}/nlopt.cc (99%)
rename {mia/core/minimizer => addons/nlopt}/nlopt.hh (100%)
rename {mia/core/minimizer => addons/nlopt}/test_nlopt.cc (99%)
copy {mia/2d/rgbio => addons/png}/CMakeLists.txt (61%)
rename mia/2d/io/png.cc => addons/png/png-gray.cc (100%)
rename mia/2d/rgbio/png.cc => addons/png/png-rgb.cc (100%)
copy {mia/2d/rgbio => addons/tiff}/CMakeLists.txt (61%)
rename {mia/2d/io => addons/tiff}/tiff.cc (100%)
copy src/{3dimageselect.cc => 2dmultiimageto3d.cc} (55%)
copy {examples/2d => test}/CMakeLists.txt (93%)
create mode 100644 test/test_ioplugins.cc
copy {mia/core => test}/test_minimizer.cc (85%)
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