This is an automated email from the git hooks/post-receive script.
plessy pushed a change to branch debian/unstable
in repository htslib.
from 648c826 New upstream tag; updated changelog.
new fa1a13a Updated Symbols file.
new d49f20e faidx: Detect compressed BGZF fasta files and create .gzi
index without asking to allow proper functioning of samtools faidx fasta.fa.gz
new 0908d4c synced_reader: Improved regions/targets to be faster with
large number of sequences; More userfriendly regions_overlap() function
new 5e770b3 vcf: bcf_update_format now sets the number of samples in
VCF record which previously was responsibility of the user; Fix in
bcf_itr_querys macro, non-existent bcf_name2id renamed to bcf_hdr_name2id
new 32187cc Merge branch 'develop' into debian/unstable
new 53af783 Updated symbols again.
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile | 2 +-
debian/libhts0.symbols | 8 +-
faidx.c | 2 +
htslib/khash_str2int.h | 98 +++++++++++++++++++
htslib/synced_bcf_reader.h | 28 +++---
htslib/vcf.h | 18 ++--
synced_bcf_reader.c | 232 ++++++++++++++++++++++-----------------------
test/test-vcf-api.c | 14 ++-
vcf.c | 19 ++--
9 files changed, 262 insertions(+), 159 deletions(-)
create mode 100644 htslib/khash_str2int.h
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