This is an automated email from the git hooks/post-receive script. osallou pushed a commit to branch master in repository picard-tools.
commit 71a6fbd18bdf5925f765870c5070f6158273161c Author: Olivier Sallou <[email protected]> Date: Tue Dec 24 11:23:38 2013 +0100 but back patch erased by error --- debian/patches/use_libjbzip2-java | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/debian/patches/use_libjbzip2-java b/debian/patches/use_libjbzip2-java index 28f8850..1e4e215 100644 --- a/debian/patches/use_libjbzip2-java +++ b/debian/patches/use_libjbzip2-java @@ -18,3 +18,21 @@ Forwarded: not-needed /** * A class for utility methods that wrap or aggregate functionality in Java IO. +@@ -237,7 +237,7 @@ + throw new PicardException(file.getAbsolutePath() + " is not a BZIP file."); + } + +- return new CBZip2InputStream(fis); ++ return new BZip2InputStream(fis); + } + catch (IOException ioe) { + throw new PicardException("Error opening file: " + file.getName(), ioe); +@@ -346,7 +346,7 @@ + final FileOutputStream fos = new FileOutputStream(file, append); + fos.write(66); //write magic number 'BZ' because CBZip2OutputStream does not do it for you + fos.write(90); +- return new BufferedOutputStream(new CBZip2OutputStream(fos), Defaults.BUFFER_SIZE); ++ return new BufferedOutputStream(new BZip2OutputStream(fos), Defaults.BUFFER_SIZE); + } + catch (IOException ioe) { + throw new PicardException("Error opening file for writing: " + file.getName(), ioe); -- Alioth's /git/debian-med/git-commit-notice on /srv/git.debian.org/git/debian-med/picard-tools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
