Author: moeller Date: 2014-01-24 16:40:40 +0000 (Fri, 24 Jan 2014) New Revision: 15849
Removed: trunk/packages/R/r-other-mott-happy/trunk/debian/patches/ELT_String.patch Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/changelog trunk/packages/R/r-other-mott-happy/trunk/debian/control trunk/packages/R/r-other-mott-happy/trunk/debian/patches/series trunk/packages/R/r-other-mott-happy/trunk/debian/rules Log: New upstream version (2.4) of happy. Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-other-mott-happy/trunk/debian/changelog 2014-01-24 12:18:03 UTC (rev 15848) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/changelog 2014-01-24 16:40:40 UTC (rev 15849) @@ -1,3 +1,10 @@ +r-other-mott-happy (2.4-1) unstable; urgency=low + + * New upstream version. + * Revived the debug package. + + -- Steffen Moeller <[email protected]> Fri, 24 Jan 2014 15:48:04 +0100 + r-other-mott-happy (2.3-1) unstable; urgency=low * Team upload. Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/control =================================================================== --- trunk/packages/R/r-other-mott-happy/trunk/debian/control 2014-01-24 12:18:03 UTC (rev 15848) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/control 2014-01-24 16:40:40 UTC (rev 15849) @@ -10,7 +10,7 @@ r-cran-g.data, r-cran-multicore, r-cran-mass -Standards-Version: 3.9.4 +Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-other-mott-happy/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-other-mott-happy/trunk/ Homepage: http://www.well.ox.ac.uk/happy/happyR.shtml @@ -25,7 +25,7 @@ Recommends: r-cran-vr, r-cran-multicore Provides: r-other-mott-happy -Conflicts: r-other-mott-happy +Conflicts: r-other-mott-happy, r-other-mott-happy.hbrem-dbg (<< ${binary:Version}) Replaces: r-other-mott-happy Description: GNU R package for fine-mapping complex diseases Happy is an R interface into the HAPPY C package for fine-mapping @@ -44,3 +44,15 @@ Read /usr/share/doc/r-other-mott-happy/README.Debian for a more detailed explanation. +Package: r-other-mott-happy.hbrem-dbg +Architecture: any +Section: debug +Depends: ${misc:Depends}, r-other-mott-happy.hbrem (= ${binary:Version}) +Description: Debug information for Happy R package native library + The documentation of Happy is fairly complete, but the runtime itself + does not inform as verbosely as users would like it on errors in + configuration files. This debug package may complement nicely the + on or other missing check on data integrity. + . + With this package installed, a debugger like 'gdb' indicates the + position in the C implementation of R routines that spawned an error. Deleted: trunk/packages/R/r-other-mott-happy/trunk/debian/patches/ELT_String.patch =================================================================== --- trunk/packages/R/r-other-mott-happy/trunk/debian/patches/ELT_String.patch 2014-01-24 12:18:03 UTC (rev 15848) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/patches/ELT_String.patch 2014-01-24 16:40:40 UTC (rev 15849) @@ -1,34 +0,0 @@ -Index: r-other-mott-happy-2.3/src/Rhappy.c -=================================================================== ---- r-other-mott-happy-2.3.orig/src/Rhappy.c -+++ r-other-mott-happy-2.3/src/Rhappy.c -@@ -210,21 +210,21 @@ - - - /* SET_VECTOR_ELT(ans,0,strains); -- SET_VECTOR_ELT(names,0,mkChar("strains")); -+ SET_STRING_ELT(names,0,mkChar("strains")); - SET_VECTOR_ELT(ans,1,markers); -- SET_VECTOR_ELT(names,1,mkChar("markers")); -+ SET_STRING_ELT(names,1,mkChar("markers")); - SET_VECTOR_ELT(ans,2,map); -- SET_VECTOR_ELT(names,2,mkChar("map")); -+ SET_STRING_ELT(names,2,mkChar("map")); - SET_VECTOR_ELT(ans,3,subjects); -- SET_VECTOR_ELT(names,3,mkChar("subjects")); -+ SET_STRING_ELT(names,3,mkChar("subjects")); - SET_VECTOR_ELT(ans,4,phenotypes); -- SET_VECTOR_ELT(names,4,mkChar("phenotypes")); -+ SET_STRING_ELT(names,4,mkChar("phenotypes")); - SET_VECTOR_ELT(ans,5,handle); -- SET_VECTOR_ELT(names,5,mkChar("handle")); -+ SET_STRING_ELT(names,5,mkChar("handle")); - SET_VECTOR_ELT(ans,6,chromosome); -- SET_VECTOR_ELT(names,6,mkChar("chromosome")); -+ SET_STRING_ELT(names,6,mkChar("chromosome")); - SET_VECTOR_ELT(ans,7,family); -- SET_VECTOR_ELT(names,7,mkChar("family")); -+ SET_STRING_ELT(names,7,mkChar("family")); - */ - SET_VECTOR_ELT(ans,0,strains); - SET_STRING_ELT(names,0,mkChar("strains")); Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/patches/series =================================================================== --- trunk/packages/R/r-other-mott-happy/trunk/debian/patches/series 2014-01-24 12:18:03 UTC (rev 15848) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/patches/series 2014-01-24 16:40:40 UTC (rev 15849) @@ -1,2 +1 @@ happyMatrices.patch -ELT_String.patch Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/rules =================================================================== --- trunk/packages/R/r-other-mott-happy/trunk/debian/rules 2014-01-24 12:18:03 UTC (rev 15848) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/rules 2014-01-24 16:40:40 UTC (rev 15849) @@ -9,6 +9,10 @@ pre-build:: [ -f NAMESPACE ] || echo 'exportPattern("^[[:alpha:]]+")' > NAMESPACE +override_dh_strip: + dh_strip -Pr-other-mott-happy.hbrem --dbg-package=r-other-mott-happy.hbrem-dbg + + override_dh_clean: $(RM) NAMESPACE dh_clean _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
