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commit b6b3146c597270a679e2b2ed102f9e834f84839d Author: Tomás Di Domenico <td...@tdido.com.ar> Date: Mon Feb 17 11:28:17 2014 +0100 Imported Upstream version 1.2.3+dfsg --- PKG-INFO | 2 +- csb/__init__.py | 2 +- csb/apps/bfit.py | 8 ++++++-- csb/apps/bfite.py | 7 +++++-- csb/apps/buildhmm.py | 8 +++++--- csb/apps/csfrag.py | 10 +++++----- csb/apps/embd.py | 8 +++++--- csb/apps/helloworld.py | 9 ++++++--- csb/apps/hhfrag.py | 9 +++++---- csb/apps/hhsearch.py | 8 +++++--- csb/apps/precision.py | 8 +++++--- csb/apps/promix.py | 10 ++++++---- 12 files changed, 55 insertions(+), 34 deletions(-) diff --git a/PKG-INFO b/PKG-INFO index a69d881..074a763 100644 --- a/PKG-INFO +++ b/PKG-INFO @@ -1,6 +1,6 @@ Metadata-Version: 1.1 Name: csb -Version: 1.2.2 +Version: 1.2.3 Summary: Computational Structural Biology Toolbox Home-page: http://csb.codeplex.com Author: Michael Habeck et al. diff --git a/csb/__init__.py b/csb/__init__.py index ff38330..e29e1aa 100644 --- a/csb/__init__.py +++ b/csb/__init__.py @@ -185,7 +185,7 @@ CSB is open source and distributed under OSI-approved MIT license:: """ -__version__ = '1.2.2.614' +__version__ = '1.2.3.617' class Version(object): diff --git a/csb/apps/bfit.py b/csb/apps/bfit.py index 2f00b85..7025e44 100644 --- a/csb/apps/bfit.py +++ b/csb/apps/bfit.py @@ -114,6 +114,10 @@ class BFitApp(csb.apps.Application): m.to_pdb(self.args.outfile) - -if __name__ == '__main__': +def main(): AppRunner().run() + + +if __name__ == '__main__': + main() + diff --git a/csb/apps/bfite.py b/csb/apps/bfite.py index 478ce99..e686753 100644 --- a/csb/apps/bfite.py +++ b/csb/apps/bfite.py @@ -109,8 +109,11 @@ class BFitApp(csb.apps.Application): out_ensemble.models.append(model) out_ensemble.to_pdb(self.args.outfile) - -if __name__ == '__main__': +def main(): AppRunner().run() + + +if __name__ == '__main__': + main() \ No newline at end of file diff --git a/csb/apps/buildhmm.py b/csb/apps/buildhmm.py index 352c043..3eda864 100644 --- a/csb/apps/buildhmm.py +++ b/csb/apps/buildhmm.py @@ -297,7 +297,9 @@ class PDBProfileBuilder(ProfileBuilder): return pdb - -if __name__ == '__main__': +def main(): + AppRunner().run() - AppRunner().run() + +if __name__ == '__main__': + main() \ No newline at end of file diff --git a/csb/apps/csfrag.py b/csb/apps/csfrag.py index fd37458..d0a6f86 100644 --- a/csb/apps/csfrag.py +++ b/csb/apps/csfrag.py @@ -533,9 +533,9 @@ def _task(helper, subject, qs, qe, qcs, scs): return [] - - -if __name__ == '__main__': - +def main(): AppRunner().run() - \ No newline at end of file + + +if __name__ == '__main__': + main() \ No newline at end of file diff --git a/csb/apps/embd.py b/csb/apps/embd.py index b2c8da3..c70ee42 100644 --- a/csb/apps/embd.py +++ b/csb/apps/embd.py @@ -275,9 +275,11 @@ class Deconvolution(object): """ for i in range(iterations): self.run_once() - -if __name__ == '__main__': - +def main(): AppRunner().run() + + +if __name__ == '__main__': + main() \ No newline at end of file diff --git a/csb/apps/helloworld.py b/csb/apps/helloworld.py index 06d2b96..7592500 100644 --- a/csb/apps/helloworld.py +++ b/csb/apps/helloworld.py @@ -48,8 +48,11 @@ class HelloWorldApp(csb.apps.Application): self.log(text) self.log('HW: done.') - -if __name__ == '__main__': + +def main(): + AppRunner(sys.argv).run() - AppRunner(sys.argv).run() + +if __name__ == '__main__': + main() diff --git a/csb/apps/hhfrag.py b/csb/apps/hhfrag.py index 51e0b86..804afbf 100644 --- a/csb/apps/hhfrag.py +++ b/csb/apps/hhfrag.py @@ -581,10 +581,11 @@ class PredictionBuilder(object): for i in ri: self.add(i) - + + +def main(): + AppRunner().run() if __name__ == '__main__': - - AppRunner().run() - \ No newline at end of file + main() \ No newline at end of file diff --git a/csb/apps/hhsearch.py b/csb/apps/hhsearch.py index eeab329..54caaf7 100644 --- a/csb/apps/hhsearch.py +++ b/csb/apps/hhsearch.py @@ -271,9 +271,11 @@ class HHsearch(object): pool.terminate() return results - + + +def main(): + AppRunner().run() if __name__ == '__main__': - - AppRunner().run() + main() \ No newline at end of file diff --git a/csb/apps/precision.py b/csb/apps/precision.py index cbe8632..d4e6159 100644 --- a/csb/apps/precision.py +++ b/csb/apps/precision.py @@ -313,9 +313,11 @@ def rmsd(target, source, fragments, pdb, save=None): continue return matches - -if __name__ == '__main__': - +def main(): AppRunner().run() + + +if __name__ == '__main__': + main() \ No newline at end of file diff --git a/csb/apps/promix.py b/csb/apps/promix.py index 628964e..fd149d9 100644 --- a/csb/apps/promix.py +++ b/csb/apps/promix.py @@ -7,7 +7,6 @@ files, each superposed on different components. Reference: Hirsch M, Habeck M. - Bioinformatics. 2008 Oct 1;24(19):2184-92 """ -import sys import numpy import csb.apps @@ -102,7 +101,10 @@ class ProMixApp(csb.apps.Application): ek.to_pdb(outfile) -if __name__ == '__main__': - AppRunner(sys.argv).run() -# vi:expandtab:smarttab:sw=4 +def main(): + AppRunner().run() + + +if __name__ == '__main__': + main() \ No newline at end of file -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-csb.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit