Author: tbooth-guest Date: 2014-02-27 15:33:03 +0000 (Thu, 27 Feb 2014) New Revision: 16340
Added: trunk/packages/parsinsert/trunk/debian/changelog trunk/packages/parsinsert/trunk/debian/compat trunk/packages/parsinsert/trunk/debian/control trunk/packages/parsinsert/trunk/debian/copyright trunk/packages/parsinsert/trunk/debian/install trunk/packages/parsinsert/trunk/debian/manpages trunk/packages/parsinsert/trunk/debian/parsinsert.1 trunk/packages/parsinsert/trunk/debian/rules trunk/packages/parsinsert/trunk/debian/source/ trunk/packages/parsinsert/trunk/debian/source/format trunk/packages/parsinsert/trunk/debian/watch Log: New package wanted by QIIME 1.8.0 Added: trunk/packages/parsinsert/trunk/debian/changelog =================================================================== --- trunk/packages/parsinsert/trunk/debian/changelog (rev 0) +++ trunk/packages/parsinsert/trunk/debian/changelog 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1,5 @@ +parsinsert (1.04-0biolinux1) precise; urgency=low + + * New package to support QIIME + + -- Tim Booth <[email protected]> Fri, 16 Aug 2013 12:09:01 +0100 Added: trunk/packages/parsinsert/trunk/debian/compat =================================================================== --- trunk/packages/parsinsert/trunk/debian/compat (rev 0) +++ trunk/packages/parsinsert/trunk/debian/compat 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1 @@ +9 Added: trunk/packages/parsinsert/trunk/debian/control =================================================================== --- trunk/packages/parsinsert/trunk/debian/control (rev 0) +++ trunk/packages/parsinsert/trunk/debian/control 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1,16 @@ +Source: parsinsert +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Tim Booth <[email protected]> +Standards-Version: 3.9.3 +Build-Depends: debhelper (>= 9) +Homepage: http://sourceforge.net/projects/parsinsert/ + +Package: parsinsert +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Parsimonious Insertion of unclassified sequences into phylogenetic trees + ParsInsert efficiently produces both a phylogenetic tree and taxonomic + classification for sequences for microbial community sequence analysis. This + is a C++ implementation of the Parsimonious Insertion algorithm. Added: trunk/packages/parsinsert/trunk/debian/copyright =================================================================== --- trunk/packages/parsinsert/trunk/debian/copyright (rev 0) +++ trunk/packages/parsinsert/trunk/debian/copyright 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1,27 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: ParsInsert +Upstream-Contact: David Knox <[email protected]> +Source: http://parsinsert.sourceforge.net + +Files: * +Copyright: © 2007-2011 David Knox +License: GPL-3 + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + On Debian systems, the full text of the GNU General Public License version 3 + can be found in the file `/usr/share/common-licenses/GPL-3'. + +Files: debian/* +Copyright: © 2014 Tim Booth <[email protected]> +License: GPL-3 + On Debian systems, the full text of the GNU General Public License version 3 + can be found in the file `/usr/share/common-licenses/GPL-3'. + Added: trunk/packages/parsinsert/trunk/debian/install =================================================================== --- trunk/packages/parsinsert/trunk/debian/install (rev 0) +++ trunk/packages/parsinsert/trunk/debian/install 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1 @@ +parsinsert /usr/bin Added: trunk/packages/parsinsert/trunk/debian/manpages =================================================================== --- trunk/packages/parsinsert/trunk/debian/manpages (rev 0) +++ trunk/packages/parsinsert/trunk/debian/manpages 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1 @@ +debian/*.1 Added: trunk/packages/parsinsert/trunk/debian/parsinsert.1 =================================================================== --- trunk/packages/parsinsert/trunk/debian/parsinsert.1 (rev 0) +++ trunk/packages/parsinsert/trunk/debian/parsinsert.1 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1,40 @@ +.\" DO MODIFY THIS FILE! It was generated by help2man 1.40.4. +.TH PARSINSERT "1" "February 2014" "parsinsert 1.04" "User Commands" +.SH NAME +ParsInsert \- Parsimonious Insertion of unclassified sequences into phylogenetic tree +.SH DESCRIPTION +.PP +\fBparsinsert [options] <insert_sequences>\fR +.PP +Perform Insertion of Sequences into Given Tree +.HP +\fB\-m\fR <mask file> \- read mask from this file +.TP +\fB\-s\fR <tree sequences> \- read core tree sequences from this file +(default: PI_Tree.fasta) +.TP +\fB\-t\fR <tree file> \- read core tree from this file +(default: PI_Tree.tree) +.HP +\fB\-x\fR <tree taxonomy> \- read core tree taxomony from this file +.TP +\fB\-o\fR <output file> \- output taxonomy for each insert sequence to this file +(default: PI_Results.log) +.HP +\fB\-l\fR [\-|<log file>] \- create log file (default is ParsInsert.log) +.HP +\fB\-n\fR# \- number of best matches to display +.HP +\fB\-c\fR# \- percent threshold cutoff +.HP +\fB\-p\fR \- print node comments in newick file +.HP +\fB\-D\fR# \- print branch lengths using # decimal places +tree sequence file: PI_Tree.fasta +.SH LICENSE +Copyright (C) 2007\-2011 David Knox + +This program comes with ABSOLUTELY NO WARRANTY + +This is free software, and you are welcome to redistribute under certain +conditions \- see /usr/share/common-licenses/GPL-3. Added: trunk/packages/parsinsert/trunk/debian/rules =================================================================== --- trunk/packages/parsinsert/trunk/debian/rules (rev 0) +++ trunk/packages/parsinsert/trunk/debian/rules 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1,20 @@ +#!/usr/bin/make -f + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ + +override_dh_auto_build: + dh_auto_build + mv ParsInsert parsinsert + + +override_dh_auto_clean: + mv parsinsert ParsInsert || true + dh_auto_clean + +# Note a manpage was generated using: +# help2man -N ./parsinsert --version-string=1.04 > debian/parsinsert.1 +# But this was then manually edited, so it is not rebuilt automatically. Property changes on: trunk/packages/parsinsert/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/parsinsert/trunk/debian/source/format =================================================================== --- trunk/packages/parsinsert/trunk/debian/source/format (rev 0) +++ trunk/packages/parsinsert/trunk/debian/source/format 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/parsinsert/trunk/debian/watch =================================================================== --- trunk/packages/parsinsert/trunk/debian/watch (rev 0) +++ trunk/packages/parsinsert/trunk/debian/watch 2014-02-27 15:33:03 UTC (rev 16340) @@ -0,0 +1,2 @@ +version=3 +http://sf.net/parsinsert/ParsInsert\.([\d\.]+)\.tgz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
