This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch debian/unstable in repository bedtools.
commit 479e63b57fd8660c4ad174ade3d17bfe58b55ee3 Merge: f93eb83 a3fefa2 Author: Charles Plessy <[email protected]> Date: Fri Mar 7 07:57:28 2014 +0900 Merge tag 'v2.19.1' into debian/unstable Makefile | 1 + .../images/tool-glyphs/map-speed-comparo.png | Bin 0 -> 41233 bytes docs/content/tools/map.rst | 35 +- genomes/mouse.mm10.genome.txt | 66 ++++ src/intersectFile/Makefile | 1 + src/mapFile/Makefile | 1 + src/mapFile/mapFile.cpp | 67 +--- src/mapFile/mapFile.h | 85 +---- src/mapFile/mapMain.cpp | 138 -------- src/nekSandbox1/Makefile | 1 + src/regressTest/Makefile | 1 + src/sampleFile/Makefile | 1 + src/utils/BinTree/Makefile | 1 + src/utils/Contexts/ContextBase.cpp | 132 +++++++- src/utils/Contexts/ContextBase.h | 21 +- src/utils/Contexts/ContextIntersect.h | 2 + src/utils/Contexts/ContextMap.cpp | 93 +----- src/utils/Contexts/ContextMap.h | 20 +- src/utils/Contexts/Makefile | 1 + src/utils/FileRecordTools/Records/BamRecord.cpp | 5 + src/utils/FileRecordTools/Records/BamRecord.h | 1 + .../FileRecordTools/Records/Bed12Interval.cpp | 26 ++ src/utils/FileRecordTools/Records/Bed12Interval.h | 1 + src/utils/FileRecordTools/Records/Bed3Interval.cpp | 20 ++ src/utils/FileRecordTools/Records/Bed3Interval.h | 2 + src/utils/FileRecordTools/Records/Bed4Interval.cpp | 5 + src/utils/FileRecordTools/Records/Bed4Interval.h | 1 + src/utils/FileRecordTools/Records/Bed5Interval.cpp | 13 + src/utils/FileRecordTools/Records/Bed5Interval.h | 1 + src/utils/FileRecordTools/Records/Bed6Interval.cpp | 17 + src/utils/FileRecordTools/Records/Bed6Interval.h | 1 + .../FileRecordTools/Records/BedGraphInterval.cpp | 11 + .../FileRecordTools/Records/BedGraphInterval.h | 1 + .../FileRecordTools/Records/BedPlusInterval.cpp | 15 + .../FileRecordTools/Records/BedPlusInterval.h | 2 + src/utils/FileRecordTools/Records/GffRecord.cpp | 36 ++ src/utils/FileRecordTools/Records/GffRecord.h | 1 + src/utils/FileRecordTools/Records/Record.cpp | 6 +- src/utils/FileRecordTools/Records/Record.h | 2 + src/utils/GenomeFile/Makefile | 1 + src/utils/KeyListOps/KeyListOps.cpp | 364 ++++++++++++++++++++ src/utils/KeyListOps/KeyListOps.h | 54 +++ src/utils/KeyListOps/KeyListOpsMethods.cpp | 368 +++++++++++++++++++++ src/utils/KeyListOps/KeyListOpsMethods.h | 113 +++++++ src/utils/{RecordOutputMgr => KeyListOps}/Makefile | 12 +- src/utils/NewChromsweep/Makefile | 1 + src/utils/RecordOutputMgr/Makefile | 1 + src/utils/general/Makefile | 2 +- src/utils/general/QuickString.cpp | 65 ++++ src/utils/general/QuickString.h | 19 ++ src/utils/version/version_release.txt | 6 +- test/intersect/test-intersect.sh | 11 +- test/map/test-map.sh | 148 +++++++-- 53 files changed, 1567 insertions(+), 432 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bedtools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
