Author: tbooth-guest Date: 2014-03-24 12:05:13 +0000 (Mon, 24 Mar 2014) New Revision: 16510
Modified: trunk/packages/galaxy/trunk/debian/changelog trunk/packages/galaxy/trunk/debian/control Log: Don't build galaxy-server-all from this package any more. Modified: trunk/packages/galaxy/trunk/debian/changelog =================================================================== --- trunk/packages/galaxy/trunk/debian/changelog 2014-03-24 11:32:27 UTC (rev 16509) +++ trunk/packages/galaxy/trunk/debian/changelog 2014-03-24 12:05:13 UTC (rev 16510) @@ -1,8 +1,11 @@ -galaxy (1.bl.py27.20140210-0biolinux2) precise; urgency=low +galaxy (1.bl.py27.20140210-0biolinux4) precise; urgency=low * Fixed misspelling of shed-tools/shed_tools that messed up symlinks + * Don't build galaxy-server-all from this package any more, as the tool + defs are not distributed in the Gaalxy core. + * Why is this package not building on the PPA? - -- Tim Booth <[email protected]> Thu, 20 Mar 2014 11:49:33 +0000 + -- Tim Booth <[email protected]> Mon, 24 Mar 2014 10:49:50 +0000 galaxy (1.bl.py27.20140210-0biolinux1) precise; urgency=low Modified: trunk/packages/galaxy/trunk/debian/control =================================================================== --- trunk/packages/galaxy/trunk/debian/control 2014-03-24 11:32:27 UTC (rev 16509) +++ trunk/packages/galaxy/trunk/debian/control 2014-03-24 12:05:13 UTC (rev 16510) @@ -27,53 +27,6 @@ This data comes in the main download and is useful for testing but isn't needed to run a regular Galaxy server. -Package: galaxy-server-all -Architecture: amd64 -Recommends: galaxy-server-test, ucsc-tools-non-free, laj, seqan-dev, mothur -Depends: ${misc:Depends}, - galaxy-server, - beam2, - bowtie2 (>=2.1.0), - bwa (>=0.6.1), - clustalw (>> 2.0), - cufflinks (>=1.2.1), - cython (>=0.15.1), - hyphy (>=2.1), - lastz (>=1.02), - macs14, - meme, - natefoo-add-scores (>=0.1), - natefoo-taxonomy (>=0.1), - ncbi-blast+ (>=2.2.25), - pass2 (>=0.1), - perm (>=0.3.9), - picard-tools (>=1.46), - python-gnuplot, - python-numpy, - python-rpy, - python-tables, - r-cran-prettyr, - r-cran-leaps, - r-cran-tcltk2, - r-cran-qvalue, - r-cran-rwave, - r-cran-wavethresh, - r-cran-waveslim, - r-cran-bitops, - samtools (>=0.1.18), - seqan-apps, - sift, - sputnik-mononucleotide (>=0.1), - tophat (>= 1.3), - velvet (>=1.1), - weblogo (>=3.1) -Description: Galaxy server with all recommended tools - This meta-package installs the full Galaxy environment including many - third party tools (see wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies). - Exceptions are currently: - LAJ - no source available - UCSC tools - license restricts redistribution outside academia - Package: galaxy-server-pg-database Architecture: amd64 Depends: galaxy-server (= ${binary:Version}), python-psycopg2 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
