This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository picard-tools.
commit 33d232d044074ccc77b280c16534014a92c4cbce Author: Charles Plessy <[email protected]> Date: Sun Apr 6 10:55:49 2014 +0900 Refreshed patch for upstream version 1.110. --- debian/patches/use_libjbzip2-java | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/debian/patches/use_libjbzip2-java b/debian/patches/use_libjbzip2-java index d991f79..f8d9570 100644 --- a/debian/patches/use_libjbzip2-java +++ b/debian/patches/use_libjbzip2-java @@ -18,7 +18,7 @@ Forwarded: not-needed /** * A class for utility methods that wrap or aggregate functionality in Java IO. -@@ -232,12 +232,12 @@ +@@ -235,12 +235,12 @@ try { final FileInputStream fis = new FileInputStream(file); @@ -33,15 +33,15 @@ Forwarded: not-needed } catch (IOException ioe) { throw new PicardException("Error opening file: " + file.getName(), ioe); -@@ -344,9 +344,9 @@ +@@ -351,9 +351,9 @@ try { final FileOutputStream fos = new FileOutputStream(file, append); - fos.write(66); //write magic number 'BZ' because CBZip2OutputStream does not do it for you + fos.write(66); //write magic number 'BZ' because BZip2OutputStream does not do it for you fos.write(90); -- return new BufferedOutputStream(new CBZip2OutputStream(fos), Defaults.BUFFER_SIZE); -+ return new BufferedOutputStream(new BZip2OutputStream(fos), Defaults.BUFFER_SIZE); +- return IOUtil.maybeBufferOutputStream(new CBZip2OutputStream(fos)); ++ return IOUtil.maybeBufferOutputStream(new BZip2OutputStream(fos)); } catch (IOException ioe) { throw new PicardException("Error opening file for writing: " + file.getName(), ioe); -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/picard-tools.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
