This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository cufflinks.
commit eaafd361325ad12e42628f4e8900f6620bf4c2ef Merge: af17562 9dea31c Author: Alexandre Mestiashvili <[email protected]> Date: Fri Apr 11 13:01:34 2014 +0200 Merge tag 'upstream/2.2.0' Upstream version 2.2.0 Makefile.in | 8 +- ax_boost_serialization.m4 | 135 ++++ config.h.in | 3 + configure | 473 +++++++++++- configure.ac | 6 +- make_bin.sh | 21 +- src/Makefile.am | 29 +- src/Makefile.in | 72 +- src/abundances.cpp | 911 ++++++++++++++++++---- src/abundances.h | 264 +++++-- src/assemble.h | 2 +- src/biascorrection.cpp | 18 +- src/biascorrection.h | 2 +- src/bundles.cpp | 179 ++++- src/bundles.h | 91 ++- src/clustering.cpp | 18 +- src/common.cpp | 50 +- src/common.h | 256 +++++- src/compress_gtf.cpp | 27 +- src/cuffcompare.cpp | 59 +- src/cuffdiff.cpp | 703 ++++++++--------- src/cufflinks.cpp | 109 +-- src/cuffnorm.cpp | 1892 +++++++++++++++++++++++++++++++++++++++++++++ src/cuffquant.cpp | 1623 ++++++++++++++++++++++++++++++++++++++ src/differential.cpp | 609 +++++---------- src/differential.h | 127 +-- src/filters.cpp | 10 +- src/filters.h | 4 +- src/genes.cpp | 2 +- src/gff.cpp | 438 +++++++---- src/gff.h | 146 ++-- src/gff_utils.cpp | 95 ++- src/gff_utils.h | 6 +- src/gffread.cpp | 266 ++++--- src/gtf_to_sam.cpp | 19 +- src/gtf_tracking.cpp | 34 +- src/gtf_tracking.h | 6 +- src/hits.cpp | 173 +++++ src/hits.h | 146 +++- src/replicates.cpp | 113 ++- src/replicates.h | 102 ++- src/rounding.h | 25 +- src/scaffolds.cpp | 14 +- src/scaffolds.h | 10 +- src/tracking.cpp | 99 +++ src/tracking.h | 118 +++ 46 files changed, 7712 insertions(+), 1801 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/cufflinks.git _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
