Author: osallou Date: 2014-06-09 10:10:42 +0000 (Mon, 09 Jun 2014) New Revision: 17088
Added: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/changelog trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/control trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/copyright trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/Makefile.patch trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fastqc.patch trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fix-help-call.patch trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/series trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/rules Removed: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/changelog trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/control trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/copyright trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/Makefile.patch trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fastqc.patch trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fix-help-call.patch trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/series trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/rules Log: [svn-buildpackage] Tagging fastqc 0.11.2+dfsg-1 Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/changelog =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/changelog 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/changelog 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,12 +0,0 @@ -fastqc (0.10.1+dfsg-2) unstable; urgency=low - - * Add patch to fix Templates and Contaminants loading - in non interactive mode (Closes: #697604) - - -- Olivier Sallou <[email protected]> Wed, 05 Jun 2013 17:08:44 +0200 - -fastqc (0.10.1+dfsg-1) unstable; urgency=low - - * Initial release (Closes: #670353) - - -- Andreas Tille <[email protected]> Tue, 20 Nov 2012 13:38:32 +0100 Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/changelog (from rev 17087, trunk/packages/babraham/fastqc/trunk/debian/changelog) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/changelog (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/changelog 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,18 @@ +fastqc (0.11.2+dfsg-1) unstable; urgency=medium + + * New upstream release + + -- Olivier Sallou <[email protected]> Mon, 09 Jun 2014 10:41:06 +0200 + +fastqc (0.10.1+dfsg-2) unstable; urgency=low + + * Add patch to fix Templates and Contaminants loading + in non interactive mode (Closes: #697604) + + -- Olivier Sallou <[email protected]> Wed, 05 Jun 2013 17:08:44 +0200 + +fastqc (0.10.1+dfsg-1) unstable; urgency=low + + * Initial release (Closes: #670353) + + -- Andreas Tille <[email protected]> Tue, 20 Nov 2012 13:38:32 +0100 Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/control =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/control 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/control 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,32 +0,0 @@ -Source: fastqc -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Steffen Moeller <[email protected]>, - Andreas Tille <[email protected]>, - Olivier Sallou <[email protected]> -Build-Depends: debhelper (>= 9), javahelper, default-jdk, libsam-java, libjbzip2-java -Standards-Version: 3.9.4 -Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ -Vcs-Svn: http://svn.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/babraham/fastqc/trunk/ - -Package: fastqc -Architecture: all -Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends}, libsam-java, libjbzip2-java -Description: quality control for high throughput sequence data - FastQC aims to provide a simple way to do some quality control checks on - raw sequence data coming from high throughput sequencing pipelines. It - provides a modular set of analyses which you can use to give a quick - impression of whether your data has any problems of which you should - be aware before doing any further analysis. - . - The main functions of FastQC are - * Import of data from BAM, SAM or FastQ files (any variant) - * Providing a quick overview to tell you in which areas there may - be problems - * Summary graphs and tables to quickly assess your data - * Export of results to an HTML based permanent report - * Offline operation to allow automated generation of reports without - running the interactive application - Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/control (from rev 17085, trunk/packages/babraham/fastqc/trunk/debian/control) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/control (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/control 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,32 @@ +Source: fastqc +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Steffen Moeller <[email protected]>, + Andreas Tille <[email protected]>, + Olivier Sallou <[email protected]> +Build-Depends: debhelper (>= 9), javahelper, default-jdk, libsam-java, libjbzip2-java, libcommons-math3-java +Standards-Version: 3.9.5 +Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/babraham/fastqc/trunk/ +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/babraham/fastqc/trunk/ + +Package: fastqc +Architecture: all +Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends}, libsam-java, libjbzip2-java, libcommons-math3-java +Description: quality control for high throughput sequence data + FastQC aims to provide a simple way to do some quality control checks on + raw sequence data coming from high throughput sequencing pipelines. It + provides a modular set of analyses which you can use to give a quick + impression of whether your data has any problems of which you should + be aware before doing any further analysis. + . + The main functions of FastQC are + * Import of data from BAM, SAM or FastQ files (any variant) + * Providing a quick overview to tell you in which areas there may + be problems + * Summary graphs and tables to quickly assess your data + * Export of results to an HTML based permanent report + * Offline operation to allow automated generation of reports without + running the interactive application + Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/copyright =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/copyright 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/copyright 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,30 +0,0 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Upstream-Name: FastQC -Source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ -Files-Excluded: *.jar - -Files: * -Copyright: Simon Adrews <[email protected]> -License: GPL-3.0+ - -Files: debian/* -Copyright: 2012 Steffen Moeller <[email protected]> -License: GPL-3.0+ - -License: GPL-3.0+ - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 3 of the License, or - (at your option) any later version. - . - This package is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/>. - . - On Debian systems, the complete text of the GNU General - Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". - Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/copyright (from rev 17086, trunk/packages/babraham/fastqc/trunk/debian/copyright) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/copyright (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/copyright 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,38 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: FastQC +Source: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/ +Files-Excluded: + *.jar + org + +Files: net/sourceforge/iharder/base64/* +Copyright: Robert Harder <[email protected]> +License: public-domain + These files are under public domain. + That means you can do whatever you want with it. + +Files: * +Copyright: Simon Adrews <[email protected]> +License: GPL-3.0+ + +Files: debian/* +Copyright: 2012 Steffen Moeller <[email protected]> +License: GPL-3.0+ + +License: GPL-3.0+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". + Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/Makefile.patch =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/patches/Makefile.patch 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/Makefile.patch 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,27 +0,0 @@ -From: Steffen Moeller <[email protected]> -Subject: Simplyfy installation by creating a Makefile - ---- /dev/null -+++ b/Makefile -@@ -0,0 +1,19 @@ -+ -+all: fastqc.jar -+ -+fastqc.jar: -+ javac -cp /usr/share/java/sam.jar:/usr/share/java/jbzip2.jar `find uk -name "*.java"` -+ jar cf fastqc.jar `find uk -name "*.class" -o -name "*.png"` -+ -+DESTDIR= -+PREFIX=/usr -+install: fastqc.jar -+ mkdir -p $(DESTDIR)$(PREFIX)/bin/ -+ cp -a fastqc $(DESTDIR)$(PREFIX)/bin/ -+ chmod +x $(DESTDIR)$(PREFIX)/bin/fastqc -+ mkdir -p $(DESTDIR)$(PREFIX)/share/fastqc/ -+ cp -a fastqc.jar $(DESTDIR)$(PREFIX)/share/fastqc/ -+ cp -r Contaminants Templates Help $(DESTDIR)$(PREFIX)/share/fastqc/ -+ -+clean: -+ find . -name "*.jar" -o -name "*.class" | xargs -r rm -+ -+.PHONY: all install Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/Makefile.patch (from rev 17086, trunk/packages/babraham/fastqc/trunk/debian/patches/Makefile.patch) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/Makefile.patch (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/Makefile.patch 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,27 @@ +From: Steffen Moeller <[email protected]> +Subject: Simplyfy installation by creating a Makefile + +--- /dev/null ++++ b/Makefile +@@ -0,0 +1,19 @@ ++ ++all: fastqc.jar ++ ++fastqc.jar: ++ javac -source 1.6 -target 1.6 -cp /usr/share/java/commons-math3.jar:/usr/share/java/sam.jar:/usr/share/java/jbzip2.jar `find uk -name "*.java"` `find net -name "*.java"` ++ jar cf fastqc.jar `find uk -name "*.class" -o -name "*.png"` ++ ++DESTDIR= ++PREFIX=/usr ++install: fastqc.jar ++ mkdir -p $(DESTDIR)$(PREFIX)/bin/ ++ cp -a fastqc $(DESTDIR)$(PREFIX)/bin/ ++ chmod +x $(DESTDIR)$(PREFIX)/bin/fastqc ++ mkdir -p $(DESTDIR)$(PREFIX)/share/fastqc/ ++ cp -a fastqc.jar $(DESTDIR)$(PREFIX)/share/fastqc/ ++ cp -r Configuration Templates Help $(DESTDIR)$(PREFIX)/share/fastqc/ ++ ++clean: ++ find . -name "*.jar" -o -name "*.class" | xargs -r rm ++ ++.PHONY: all install Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fastqc.patch =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fastqc.patch 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,42 +0,0 @@ -From: Steffen Moeller <[email protected]> -Subject: Ensure proper CLASSPATH according to location of Debian JARs - ---- a/fastqc -+++ b/fastqc -@@ -17,12 +17,12 @@ - $delimiter = ';'; - } - -+my $JavaClasspathExtraDir="/usr/share/java"; -+ - if ($ENV{CLASSPATH}) { -- $ENV{CLASSPATH} .= "$delimiter$RealBin$delimiter$RealBin/sam-1.32.jar$delimiter$RealBin/jbzip2-0.9.jar"; --} --else { -- $ENV{CLASSPATH} = "$RealBin$delimiter$RealBin/sam-1.32.jar$delimiter$RealBin/jbzip2-0.9.jar"; -+ $ENV{CLASSPATH} .= "$delimiter"; - } -+$ENV{CLASSPATH} .= "$JavaClasspathExtraDir/sam.jar$delimiter$JavaClasspathExtraDir/jbzip2.jar:$RealBin/fastqc.jar"; - - my @java_args; - my @files; -@@ -177,10 +177,10 @@ - - - if ($java_bin ne 'java') { -- system $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication", @files; -+ system $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files; - } - else { -- exec $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication", @files; -+ exec $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files; - } - - __DATA__ -@@ -273,4 +273,4 @@ - Any bugs in fastqc should be reported either to [email protected] - or in www.bioinformatics.babraham.ac.uk/bugzilla/ - -- -\ No newline at end of file -+ Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fastqc.patch (from rev 17085, trunk/packages/babraham/fastqc/trunk/debian/patches/fastqc.patch) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fastqc.patch (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fastqc.patch 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,45 @@ +From: Steffen Moeller <[email protected]> +Subject: Ensure proper CLASSPATH according to location of Debian JARs + +--- a/fastqc ++++ b/fastqc +@@ -33,16 +33,15 @@ + } + + my $delimiter = ':'; ++my $JavaClasspathExtraDir="/usr/share/java"; + + if ($^O =~ /Win/) { + $delimiter = ';'; + } + + if ($ENV{CLASSPATH}) { +- $ENV{CLASSPATH} .= "$delimiter$RealBin$delimiter$RealBin/sam-1.103.jar$delimiter$RealBin/jbzip2-0.9.jar"; +-} +-else { +- $ENV{CLASSPATH} = "$RealBin$delimiter$RealBin/sam-1.103.jar$delimiter$RealBin/jbzip2-0.9.jar"; ++ $ENV{CLASSPATH} .= "$delimiter"; ++ $ENV{CLASSPATH} .= "$JavaClasspathExtraDir/commons-math3.jar$delimiter$JavaClasspathExtraDir/sam.jar$delimiter$JavaClasspathExtraDir/jbzip2.jar:$RealBin/fastqc.jar"; + } + + my @java_args; +@@ -251,10 +250,10 @@ + + + if ($java_bin ne 'java') { +- system $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication", @files; ++ system $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files; + } + else { +- exec $java_bin,@java_args, "uk.ac.babraham.FastQC.FastQCApplication", @files; ++ exec $java_bin,@java_args,"-jar","/usr/share/fastqc/fastqc.jar", @files; + } + + __DATA__ +@@ -367,4 +366,4 @@ + Any bugs in fastqc should be reported either to [email protected] + or in www.bioinformatics.babraham.ac.uk/bugzilla/ + +- +\ No newline at end of file ++ Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fix-help-call.patch =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/patches/fix-help-call.patch 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fix-help-call.patch 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,18 +0,0 @@ -From: Andreas Tille <[email protected]> -Subject: The original way to open Help text ends up in an exception - Setting the explicite file name as well as avoiding the call to - ClassLoader.getSystemResource - helps fixing this. Specifically the later is important, see - https://lists.debian.org/debian-med/2012/11/msg00073.html - ---- a/uk/ac/babraham/FastQC/FastQCMenuBar.java -+++ b/uk/ac/babraham/FastQC/FastQCMenuBar.java -@@ -132,7 +132,7 @@ public class FastQCMenuBar extends JMenu - } - else if (command.equals("help_contents")) { - try { -- new HelpDialog(application,new File(URLDecoder.decode(ClassLoader.getSystemResource("Help").getFile(),"UTF-8"))); -+ new HelpDialog(application,new File(URLDecoder.decode("/usr/share/fastqc/Help","UTF-8"))); - } - catch (UnsupportedEncodingException e1) { - e1.printStackTrace(); Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fix-help-call.patch (from rev 17084, trunk/packages/babraham/fastqc/trunk/debian/patches/fix-help-call.patch) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fix-help-call.patch (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/fix-help-call.patch 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,18 @@ +From: Andreas Tille <[email protected]> +Subject: The original way to open Help text ends up in an exception + Setting the explicite file name as well as avoiding the call to + ClassLoader.getSystemResource + helps fixing this. Specifically the later is important, see + https://lists.debian.org/debian-med/2012/11/msg00073.html + +--- a/uk/ac/babraham/FastQC/FastQCMenuBar.java ++++ b/uk/ac/babraham/FastQC/FastQCMenuBar.java +@@ -132,7 +132,7 @@ public class FastQCMenuBar extends JMenu + } + else if (command.equals("help_contents")) { + try { +- new HelpDialog(application,new File(URLDecoder.decode(ClassLoader.getSystemResource("Help").getFile(),"UTF-8"))); ++ new HelpDialog(application,new File(URLDecoder.decode("/usr/share/fastqc/Help","UTF-8"))); + } + catch (UnsupportedEncodingException e1) { + e1.printStackTrace(); Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/series =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/patches/series 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/series 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,4 +0,0 @@ -Makefile.patch -fastqc.patch -fix-help-call.patch -fix_icon_loading Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/series (from rev 17084, trunk/packages/babraham/fastqc/trunk/debian/patches/series) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/series (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/patches/series 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,3 @@ +Makefile.patch +fastqc.patch +fix-help-call.patch Deleted: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/rules =================================================================== --- trunk/packages/babraham/fastqc/trunk/debian/rules 2013-06-05 15:21:34 UTC (rev 13843) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/rules 2014-06-09 10:10:42 UTC (rev 17088) @@ -1,17 +0,0 @@ -#!/usr/bin/make -f - -# Uncomment this to turn on verbose mode. -#export DH_VERBOSE=1 - -%: - dh $@ --with javahelper - -get-orig-source: - mkdir -p ../tarballs - uscan --verbose --force-download --repack --destdir ../tarballs - # Alternatively you might like to use the following uscan command - # that requires devscripts > 2.12.4 which is not yet released at - # the time writing. The code can be obtained via - # git clone git://[email protected]/git/users/tille/devscripts.git - # and then use scripts/uscan.pl - # uscan --verbose --force-download --repack-compression xz --destdir ../tarballs Copied: trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/rules (from rev 17086, trunk/packages/babraham/fastqc/trunk/debian/rules) =================================================================== --- trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/rules (rev 0) +++ trunk/packages/babraham/fastqc/tags/0.11.2+dfsg-1/debian/rules 2014-06-09 10:10:42 UTC (rev 17088) @@ -0,0 +1,21 @@ +#!/usr/bin/make -f + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ --with javahelper + +get-orig-source: + mkdir -p ../tarballs + uscan --verbose --force-download --repack --destdir ../tarballs + # Alternatively you might like to use the following uscan command + # that requires devscripts > 2.12.4 which is not yet released at + # the time writing. The code can be obtained via + # git clone git://[email protected]/git/users/tille/devscripts.git + # and then use scripts/uscan.pl + # uscan --verbose --force-download --repack-compression xz --destdir ../tarballs + +override_dh_clean: + rm -f fastqc.jar + dh_clean _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
