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malex-guest pushed a change to branch master
in repository gmap.
from 493c311 d/manpages: install gmap_build d/copyright: included
full text of BSD license d/gmap_setup.1: binary is deprecated and removed from
the distribution
new 6f22792 d/copyright: fix copyright-refers-to-symlink-license
new 536c54f Imported Upstream version 2014-07-04
new a78521e Merge tag 'upstream/2014-07-04'
new d5bfa54 d/changelog: new upstream release d/*.1: updated man
pages
new 6bef46f d/docs: add AUTHORS d/control: removed help2man from
Build-Depends:
new 29dae58 upload to unstable
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
ChangeLog | 102 +++
VERSION | 2 +-
configure | 24 +-
debian/changelog | 8 +-
debian/control | 1 -
debian/copyright | 2 +-
debian/docs | 1 +
debian/gmap.1 | 2 +-
debian/gmap_build.1 | 6 +-
debian/gsnap.1 | 2 +-
src/access.c | 134 ++--
src/dynprog.c | 9 +-
src/dynprog_end.c | 532 ++++++--------
src/dynprog_simd.c | 40 +-
src/dynprog_simd.h | 2 +-
src/dynprog_single.c | 63 +-
src/genome.c | 14 +-
src/genome.h | 8 +-
src/genome128_hr.c | 367 +++++-----
src/gmap.c | 27 +-
src/gmapindex.c | 23 +-
src/intlist.c | 16 +-
src/intlist.h | 4 +-
src/samprint.c | 10 +-
src/sarray-read.c | 617 ++++++++++------
src/sarray-write.c | 742 ++++++++++++++++++--
src/sarray-write.h | 6 +-
src/splice.c | 1046 ++++++++++++++++++----------
src/splice.h | 57 +-
src/splicetrie.c | 419 +++++------
src/stage1hr.c | 1132 ++++++++++++++++--------------
src/stage3.c | 129 ++--
src/stage3hr.c | 1893 +++++++++++++++++++++++++++++---------------------
src/stage3hr.h | 19 +-
src/substring.c | 316 +++------
src/uint8list.c | 16 +-
src/uint8list.h | 4 +-
src/uintlist.c | 16 +-
src/uintlist.h | 4 +-
39 files changed, 4649 insertions(+), 3166 deletions(-)
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